Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010407: Clavibacter michiganensis subsp. sepedonicus chromosome, complete

NCBI: NC_010407

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Causative agent of bacterial ring rot. Isolated from infected potato. This organism was first described and classified in 1914 as "Bacterium sepedonicus" and is considered a major plant pathogen. It is a phytopathogenic actinomycete that causes wilt and tuber rot in potato, which is a plant vascular disease with very high bacterial titers. Pathogenicity is believed to be associated with the presence of two plasmids, pCSL1 and pCSL2. This species is subdivided into five subspecies: michiganensis, sepedonicus, nebraskensis, tesselarius and insidiosus each of which infects specific hosts: tomato, potato, corn, wheat and alfalfa, respectively. Members of the Clavibacter genus are known to produce antimicrobial compounds.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
132960*5163318674Island text1.5036812.645916.5245Neighbours11BLASTN+IslandViewer 32960.gbk
2151599*17558923991Island text1.4472814.956212.3706Neighbours11BLASTN+151599.gbk
3316320*33498318664Island text1.507318.263631.3436Neighbours11BLASTN+316320.gbk
441091843527224355Island text1.7398413.070310.3667Neighbours11BLASTN+410918.gbk
51114408113894624539Island text1.6092310.858516.8778Neighbours11BLASTN+IslandViewer 1114408.gbk
61775227180054825322Island text1.5504614.682615.141Neighbours11BLASTN+1775227.gbk
72038499205674718249Island text1.6296611.724810.9758Neighbours11BLASTN+IslandViewer 2038499.gbk
82406113242499918887Island text1.746811.855519.4055Neighbours11BLASTNIslandViewer 2406113.gbk
93132683315489022208Island text2.0795813.97211.661Neighbours11BLASTN+IslandViewer 3132683.gbk
103174470319754523076Island text3.5058915.784716.072NeighboursBLASTN+IslandViewer 3174470.gbk