Pre_GI Gene

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Host: NC_010407 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010407:316320 Clavibacter michiganensis subsp. sepedonicus chromosome, complete

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Causative agent of bacterial ring rot. Isolated from infected potato. This organism was first described and classified in 1914 as "Bacterium sepedonicus" and is considered a major plant pathogen. It is a phytopathogenic actinomycete that causes wilt and tuber rot in potato, which is a plant vascular disease with very high bacterial titers. Pathogenicity is believed to be associated with the presence of two plasmids, pCSL1 and pCSL2. This species is subdivided into five subspecies: michiganensis, sepedonicus, nebraskensis, tesselarius and insidiosus each of which infects specific hosts: tomato, potato, corn, wheat and alfalfa, respectively. Members of the Clavibacter genus are known to produce antimicrobial compounds.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
316320316985666putative integral membrane transport proteinQuickGO ontologyBLASTP
317116317811696putative ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
317885318787903putative integral membrane proteinQuickGO ontologyBLASTP
318831319232402putative integral membrane proteinQuickGO ontologyBLASTP
31949731987137530S ribosomal protein S12QuickGO ontologyBLASTP
31987132034147130S ribosomal protein S7QuickGO ontologyBLASTP
3203893225032115elongation factor GQuickGO ontologyBLASTP
3226183238111194elongation factor TuQuickGO ontologyBLASTP
323961324929969hypothetical proteinBLASTP
32536932567730930S ribosomal protein S10QuickGO ontologyBLASTP
32568632633965450S ribosomal protein L3QuickGO ontologyBLASTP
32634232699865750S ribosomal protein L4QuickGO ontologyBLASTP
32699532729430050S ribosomal protein L23QuickGO ontologyBLASTP
32731732815684050S ribosomal protein L2QuickGO ontologyBLASTP
32816932845028230S ribosomal protein S19QuickGO ontologyBLASTP
32847632886839350S ribosomal protein L22QuickGO ontologyBLASTP
32886832966579830S ribosomal protein S3QuickGO ontologyBLASTP
32966833008742050S ribosomal protein L16QuickGO ontologyBLASTP
33008733041332750s ribosomal protein l29QuickGO ontologyBLASTP
33041033071230330S ribosomal protein S17QuickGO ontologyBLASTP
33072333110938750S ribosomal protein L14QuickGO ontologyBLASTP
33111233147136050S ribosomal protein L24QuickGO ontologyBLASTP
33147433207059750S ribosomal protein L5QuickGO ontologyBLASTP
33223633260737230S ribosomal protein S8QuickGO ontologyBLASTP
33261233314853750S ribosomal protein L6QuickGO ontologyBLASTP
33314533352237850S ribosomal protein L18QuickGO ontologyBLASTP
33356433422366030S ribosomal protein S5QuickGO ontologyBLASTP
33422333440518350S ribosomal protein L30QuickGO ontologyBLASTP
33443833498354650S ribosomal protein L15QuickGO ontologyBLASTP