Pre_GI Gene

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Host: NC_009480 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009480:31412 Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Phytopathogen that causes bacterial wilt and canker of tomato (Lycopersicon esculentum). This is considered to be the most important bacterial disease of tomato causing substantial economic losses worldwide. Bacteria enter the plant by wounds on root or stem and then find their way into the xylem allowing a massive systemic colonization. The first stage of the disease is characterized by unilateral wilting of leaves. Wilting then spreads to all leaves, canker lesions develop on the stem and the plant dies. If infection occurs at a late stage of plant development, plants can survive and yield fruit that may have spots, so called bird's eyes. Often the seeds will be infected and this has been the major source for outbreaks of Clavibacter michiganensis subsp. michiganensis infections in agriculture. Members of the Clavibacter genus are known to produce antimicrobial compounds.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
31412331781767ATP-dependent DNA helicaseQuickGO ontologyBLASTP
3317533420246hypothetical proteinBLASTP
3367734654978putative glutaminaseQuickGO ontologyBLASTP
34674357231050putative hydrolaseacyltransferaseQuickGO ontologyBLASTP
3584136227387hypothetical proteinBLASTP
36305375521248hypothetical protein
3756937958390hypothetical proteinBLASTP
4005440860807putative sugar phosphate isomeraseepimeraseQuickGO ontologyBLASTP
40857419661110putative dehydrogenaseoxidoreductaseQuickGO ontologyBLASTP
42124432091086putative transcriptional regulator LacI familyQuickGO ontologyBLASTP
4532745899573hypothetical proteinBLASTP
4787948292414hypothetical proteinBLASTP
4873449567834putative extracellular serine protease family S1AQuickGO ontologyBLASTP
4977550104330hypothetical proteinBLASTP
5037651356981putative extracellular serine proteaseQuickGO ontologyBLASTP
51503525071005conserved hypothetical protein putative extracellular serine proteaseQuickGO ontologyBLASTP
5270853559852hypothetical proteinBLASTP
53883548961014conserved hypothetical protein putative extracellular serine proteaseQuickGO ontologyBLASTP
5704357396354hypothetical proteinBLASTP
6190962718810hypothetical protein putative phage proteinQuickGO ontology
6342263748327hypothetical proteinBLASTP
6455864995438hypothetical protein
65645674681824putative beta-N-acetylglucosaminidaseQuickGO ontologyBLASTP
67885688861002conserved hypothetical protein putative extracellular proteaseQuickGO ontologyBLASTP
6908569936852hypothetical proteinBLASTP
7078571645861putative extracellular serine protease family S1 chymotrypsinQuickGO ontologyBLASTP
7477975633855putative extracellular serine protease family S1 chymotrypsinQuickGO ontologyBLASTP
76541775451005hypothetical proteinBLASTP
77538785421005hypothetical proteinBLASTP