Pre_GI: BLASTP Hits

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Query: NC_010322:1623599:1638966 Pseudomonas putida GB-1 chromosome, complete genome

Start: 1638966, End: 1642904, Length: 3939

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009512:4287605:4295234429523442990793846Pseudomonas putida F1, complete genomeYD repeat-containing protein0777
NC_017986:1042642:1053283105328310571283846Pseudomonas putida ND6 chromosome, complete genomeYD repeat-/RHS repeat-containing protein0776
NC_016830:5109953:5116855511685551215794725Pseudomonas fluorescens F113 chromosome, complete genomeYD repeat protein0750
NC_010322:1623599:1627462162746216325315070Pseudomonas putida GB-1 chromosome, complete genomeYD repeat-containing protein0739
NC_015733:1680500:1685350168535016891323783Pseudomonas putida S16 chromosome, complete genomeYD repeat/RHS repeat-containing protein0702
NC_016830:5109953:5131208513120851361844977Pseudomonas fluorescens F113 chromosome, complete genomeYD repeat protein4e-160566
NC_009512:4287605:4307156430715643123275172Pseudomonas putida F1, complete genomeYD repeat protein5e-111403
NC_010501:1629107:1634063163406316390394977Pseudomonas putida W619, complete genomeYD repeat protein6e-103376
NC_012214:3502992:3519126351912635240904965Erwinia pyrifoliae Ep1/96, complete genomeNematicidal protein5e-85317
NC_010694:614985:6149856149856199614977Erwinia tasmaniensis, complete genomeSimilar to Nematicidal protein 26e-78293
NC_014228:1712339:1716790171679017217544965Xenorhabdus nematophila ATCC 19061, complete genomeputative Nematicidal protein 22e-72275
NC_013892:2108175:2155453215545321598414389Xenorhabdus bovienii SS-2004 chromosome, complete genomeNematicidal protein 21e-71272
NC_010067:4418000:4427234442723444311303897Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-38163
NC_009783:1665610:1681367168136716860464680Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequencehypothetical protein1e-32142
NC_009668:46010:5085650856559525097Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceYD repeat-containing protein4e-28127
NC_012214:2673058:2679038267903826841285091Erwinia pyrifoliae Ep1/96, complete genomeSimilar to the nematicidal protein 21e-26123
NC_013961:1246454:1259504125950412645945091Erwinia amylovora, complete genomeTeneurin-14e-25118
NC_013971:1283942:1297034129703413021245091Erwinia amylovora ATCC 49946 chromosome, complete genomeRHS family protein3e-25118
NC_010694:2565580:2571660257166025767505091Erwinia tasmaniensis, complete genomeSimilar to the nematicidal protein 24e-24114
NC_010506:4951500:4969347496934749731503804Shewanella woodyi ATCC 51908, complete genomeYD repeat protein3e-22108
NC_013961:1246454:1254272125427212593655094Erwinia amylovora, complete genomeProtein rhsC precursor3e-1998.6
NC_013971:1283942:1291766129176612968955130Erwinia amylovora ATCC 49946 chromosome, complete genomeRHS family protein3e-1998.6
NC_015733:1680500:1684093168409316853251233Pseudomonas putida S16 chromosome, complete genomeYD repeat-containing protein3e-1792
NC_012214:2673058:2684270268427026893635094Erwinia pyrifoliae Ep1/96, complete genomeSimilar to the nematicidal protein 24e-1378.2
NC_010694:2565580:2576972257697225820625091Erwinia tasmaniensis, complete genomeNematicidal protein 27e-1377.4
NC_014393:691000:6932956932957031619867Clostridium cellulovorans 743B chromosome, complete genomeYD repeat-containing protein6e-0964.3
NC_011149:1110642:1116901111690111210674167Salmonella enterica subsp. enterica serovar Agona str. SL483,protein RhsA3e-0862
NC_011205:1227373:1229589122958912338064218Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein3e-0862
NC_011274:1129686:1143020114302011471774158Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91RHS family protein5e-0861.2
NC_010468:2406387:2416103241610324199093807Escherichia coli ATCC 8739, complete genomeYD repeat protein1e-0760.5
NC_007384:1763375:1776639177663917799083270Shigella sonnei Ss046, complete genomerhs core protein with extension1e-0760.1
NC_016822:1839739:1855406185540618588223417Shigella sonnei 53G, complete genomerhs core protein with extension1e-0759.7
NC_012034:390273:3950643950644011716108Anaerocellum thermophilum DSM 6725, complete genomeYD repeat-containing protein2e-0759.3
NC_014720:4170:1290912909218938985Caldicellulosiruptor kronotskyensis 2002 chromosome, completeyd repeat protein4e-0758.2
NC_002655:261236:2670792670792712934215Escherichia coli O157:H7 EDL933, complete genomehypothetical protein5e-0757.8
NC_009012:1663357:1664451166445116703305880Clostridium thermocellum ATCC 27405, complete genomeYD repeat protein6e-0757.8
NC_002695:261235:2670782670782712924215Escherichia coli O157:H7 str. Sakai, complete genomeRhsG core protein with extension6e-0757.8
NC_014392:355443:3600883600883675987511Caldicellulosiruptor obsidiansis OB47 chromosome, complete genome6e-0757.8
NC_016822:267758:2786032786032828204218Shigella sonnei 53G, complete genomerhs core protein with extension6e-0757.8
NC_007384:278810:2810272810272852354209Shigella sonnei Ss046, complete genomerhs core protein with extension6e-0757.8
NC_007384:1763375:1771082177108217748853804Shigella sonnei Ss046, complete genomerhs core protein with extension8e-0757.4
NC_013941:261094:2670212670212712534233Escherichia coli O55:H7 str. CB9615 chromosome, complete genome7e-0757.4
NC_011353:261220:2670632670632712954233Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeRHS Repeat family protein7e-0757.4
NC_013008:261226:2670692670692713014233Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein7e-0757.4
NC_007645:3870466:3912384391238439166224239Hahella chejuensis KCTC 2396, complete genomeRhs family protein1e-0656.6
NC_014643:1577021:1582530158253015900027473Rothia dentocariosa ATCC 17931 chromosome, complete genomehypothetical protein1e-0656.6
NC_020054:6162836:6173298617329861775034206Fibrella aestuarina BUZ 2 drat genomeProtein rhsD1e-0656.6
NC_002973:461712:4675164675164741036588Listeria monocytogenes str. 4b F2365, complete genomewall-associated protein, putative2e-0656.2
NC_012034:6469:1264412644217279084Anaerocellum thermophilum DSM 6725, complete genomeYD repeat protein2e-0655.8
NC_015713:2453409:2470553247055324758805328Simkania negevensis Z chromosome gsn.131, complete genomehypothetical protein2e-0655.8
NC_020126:6264651:6275416627541662787273312Myxococcus stipitatus DSM 14675, complete genomehypothetical protein3e-0655.1
NC_013216:3061491:3079669307966930834843816Desulfotomaculum acetoxidans DSM 771, complete genomeYD repeat protein4e-0655.1
NC_011660:2175537:2181302218130221878986597Listeria monocytogenes HCC23 chromosome, complete genomewall-associated protein4e-0655.1
NC_011741:256932:2628582628582670844227Escherichia coli IAI1 chromosome, complete genomeRhsG core protein with extension4e-0655.1
CU928160:256932:2628582628582670844227Escherichia coli IAI1 chromosome, complete genomeRhsG core protein with extension4e-0655.1
NC_003212:456214:4631384631384696416504Listeria innocua Clip11262, complete genomehypothetical protein4e-0655.1
NC_014393:4352216:43633464363346437395010605Clostridium cellulovorans 743B chromosome, complete genomehypothetical protein4e-0655.1
NC_007434:2290934:2295521229552123003024782Burkholderia pseudomallei 1710b chromosome I, complete sequencerhsD protein5e-0654.7
NC_008027:4280000:4290862429086242956764815Pseudomonas entomophila L48, complete genomehypothetical protein4e-0654.7
NC_011741:256932:2705612705612748144254Escherichia coli IAI1 chromosome, complete genomeputative Rhs Core protein7e-0653.9
CU928160:256932:2705612705612748144254Escherichia coli IAI1 chromosome, complete genomePutative Rhs Core protein7e-0653.9
NC_008555:400352:4061494061494127276579Listeria welshimeri serovar 6b str. SLCC5334, complete genomewall-associated RHS family protein, putative7e-0653.9
NC_014228:3442159:3447150344715034515804431Xenorhabdus nematophila ATCC 19061, complete genomeputative Rhs family protein8e-0653.9
NC_007645:5747721:57599405759940577152811589Hahella chejuensis KCTC 2396, complete genomeRhs family protein1e-0553.5
NC_002939:47406:5392553925602786354Geobacter sulfurreducens PCA, complete genomesalmonella virulence plasmid 65kDa B protein /YD repeat protein1e-0553.5