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Query: NC_009525:1685522:1695513 Mycobacterium tuberculosis H37Ra, complete genome

Start: 1695513, End: 1695953, Length: 441

Host Lineage: Mycobacterium tuberculosis; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain (H37Ra; ATCC 25177) is an avirulent strain derived from its virulent parent strain H37 (isolated from a 19 year-old male patient with chronic pulmonary tuberculosis by Edward R. Baldwin in 1905). Causative agent of tuberculosis. This genus comprises a number of Gram-positive, acid-fast, rod-shaped aerobic bacteria and is the only member of the family Mycobacteriaceae within the order Actinomycetales. Like other closely related Actinomycetales, such as Nocardia and Corynebacterium, mycobacteria have unusually high genomic DNA GC content and are capable of producing mycolic acids as major components of their cell wall. This bacterium is the causative agent of tuberculosis - a chronic infectious disease with a growing incidence worldwide. It infects 1.7 billion people a year (~33% of the entire world population) and causes over 3 million deaths/year. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. The sluggish growth rate is a result of the tough cell wall that resists the passage of nutrients into the cell and inhibits waste products to be excreted out of the cell. The specialized cell envelope of this organism resembles a modified Gram positive cell wall. It also contains complex fatty acids, such as mycolic acids, that cause the waxy appearance and impermeability of the envelope. These acids are found bound to the cell envelope, but also form cord factors when linked with a carbohydrate component to form a cord-like structure. Primary infection occurs by inhalation of the organism in droplets that are aerosolized by an infected person. The organism initially replicates in cells of the terminal airways, after which it is taken up by, and replicates in, alveolar macrophages. Macrophages distribute the organism to other areas of the lungs and the regional lymph nodes. Once a cell-mediated hypersensitivity immune response develops, replication of the organism decreases and the bacteria become restricted to developing granulomas.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_019950:1689910:1698752169875216999001149Mycobacterium canettii CIPT 140060008 complete genomeLipopolysaccharide biosynthesis protein RffA1e-81300
NC_016804:1679357:1689348168934816904961149Mycobacterium bovis BCG str. Mexico chromosome, complete genomeTDP-4-oxo-6-deoxy-D-glucose transaminase3e-81299
NC_008769:1709078:1719069171906917202171149Mycobacterium bovis BCG str. Pasteur 1173P2, complete genomehypothetical protein3e-81299
NC_002945:1680751:1690741169074116918891149Mycobacterium bovis AF2122/97, complete genomeTDP-4-oxo-6-deoxy-D-glucose transaminase3e-81299
NC_012207:1681971:1691962169196216931101149Mycobacterium bovis BCG str. Tokyo 172, complete genomeTDP-4-oxo-6-deoxy-D-glucose transaminase3e-81299
NC_015848:1708176:171816717181671718607441Mycobacterium canettii CIPT 140010059, complete genomehypothetical protein1e-80298
NC_000962:1684005:169399616939961694544549Mycobacterium tuberculosis H37Rv, complete genomehypothetical protein6e-81298
NC_009565:1688642:169863316986331699175543Mycobacterium tuberculosis F11, complete genomehypothetical protein5e-81298
NC_012943:2707677:271892827189282719470543Mycobacterium tuberculosis KZN 1435 chromosome, complete genomehypothetical protein5e-81298
NC_016768:2704350:271560127156012716143543Mycobacterium tuberculosis KZN 4207 chromosome, complete genomehypothetical protein5e-81298
NC_010612:2777687:2788950278895027900981149Mycobacterium marinum M, complete genomepyridoxal phosphate-dependent enzyme, WecE8e-67251
NC_008702:2942246:2950840295084029519821143Azoarcus sp. BH72, complete genomeaminotransferase3e-48189
NC_008380:855246:8627448627448638591116Rhizobium leguminosarum bv. viciae 3841, complete genomeputative lipopolysaccharide biosynthesis protein8e-46182
NC_017026:1686500:169501316950131695279267Mycobacterium tuberculosis RGTB327 chromosome, complete genomehypothetical protein4e-44176
NC_016112:3103716:3132649313264931337761128Methylomicrobium alcaliphilum chromosome, complete genomelipopolysaccharide biosynthesis protein, TDP-4-oxo-6-deoxy-D-glucose transaminase4e-40163
NC_014973:2894248:2904650290465029057861137Geobacter sp. M18 chromosome, complete genomeTDP-4-keto-6-deoxy-D-glucose transaminase2e-39160
NC_009719:3532587:3555397355539735565331137Parvibaculum lavamentivorans DS-1 chromosome, complete genomeTDP-4-oxo-6-deoxy-D-glucose transaminase1e-31135
NC_013410:2519441:2545567254556725467121146Fibrobacter succinogenes subsp. succinogenes S85 chromosome,TDP-4-oxo-6-deoxy-D-glucose transaminase4e-31133
NC_005139:305420:3136013136013147521152Vibrio vulnificus YJ016 chromosome I, complete sequencelipopolysaccharide biosynthesis protein7e-31132
NC_007796:3379614:3381854338185433830201167Methanospirillum hungatei JF-1, complete genomeTDP-4-keto-6-deoxy-D-glucose transaminase2e-30130
NC_015500:311845:3346893346893358161128Treponema brennaborense DSM 12168 chromosome, complete genomeTDP-4-keto-6-deoxy-D-glucose transaminase7e-30129
NC_007712:4067500:4082611408261140837321122Sodalis glossinidius str. 'morsitans', complete genomeputative lipopolysaccharide biosynthesis protein1e-29128
NC_010524:674216:6891266891266902561131Leptothrix cholodnii SP-6, complete genomeTDP-4-keto-6-deoxy-D-glucose transaminase2e-29127
NC_006512:551312:5756335756335767751143Idiomarina loihiensis L2TR, complete genomePredicted pyridoxal phosphate-dependent enzyme4e-29126
NC_015633:413587:4172874172874184321146Vibrio anguillarum 775 chromosome chromosome I, complete sequencedTDP-4-dehydro-6-deoxy-D-glucose 4-aminotransferase2e-28124
NC_013595:7109039:7122343712234371235721230Streptosporangium roseum DSM 43021, complete genomeTDP-4-oxo-6-deoxy-D-glucose transaminase1e-26118
NC_016604:297687:3233773233773245281152Mycobacterium rhodesiae NBB3 chromosome, complete genomeTDP-4-keto-6-deoxy-D-glucose transaminase1e-23108
NC_014830:532122:5354495354495366031155Intrasporangium calvum DSM 43043 chromosome, complete genomeTDP-4-keto-6-deoxy-D-glucose transaminase5e-23106
NC_015138:1016000:1032145103214510332751131Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeTDP-4-keto-6-deoxy-D-glucose transaminase8e-22102
NC_011663:1709003:1720746172074617218701125Shewanella baltica OS223 chromosome, complete genomeTDP-4-oxo-6-deoxy-D-glucose transaminase3e-1580.9
NC_019960:425246:4356984356984368281131Prevotella dentalis DSM 3688 chromosome 1, complete sequenceTDP-4-keto-6-deoxy-D-glucose transaminase8e-1475.9
NC_009337:1448607:1452047145204714531591113Chlorobium phaeovibrioides DSM 265 chromosome, complete genomeDegT/DnrJ/EryC1/StrS aminotransferase5e-1166.6
NC_007796:3351962:3368737336873733699121176Methanospirillum hungatei JF-1, complete genomeDegT/DnrJ/EryC1/StrS aminotransferase6e-1166.2
NC_014121:3399685:3421841342184134229921152Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completePsb28e-1062.4
NC_016002:3704006:3714039371403937151871149Pseudogulbenkiania sp. NH8B, complete genomeDegT/DnrJ/EryC1/StrS aminotransferase1e-0962
NC_015666:1672740:1689451168945116906381188Halopiger xanaduensis SH-6 chromosome, complete genomeglutamine--scyllo-inositol transaminase2e-0961.2
NC_015160:136055:1377161377161388791164Odoribacter splanchnicus DSM 20712 chromosome, complete genomeUDP-4-keto-6-deoxy-N-acetylglucosamine4-aminotra nsferase3e-0960.8
NC_013665:738883:7551987551987563671170Methanocella paludicola SANAE, complete genomeputative aminotransferase3e-0960.5
NC_011886:4336417:4343115434311543442241110Arthrobacter chlorophenolicus A6, complete genomeDegT/DnrJ/EryC1/StrS aminotransferase8e-0959.3
NC_020063:1659795:1667619166761916687701152Enterobacteriaceae bacterium strain FGI 57, complete genomeUDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase7e-0959.3
NC_005071:87907:1102641102641114301167Prochlorococcus marinus str. MIT 9313, complete genomecapsular polysaccharide biosynthesis protein9e-0958.9
NC_018876:2277160:2282134228213422832731140Methanolobus psychrophilus R15 chromosome, complete genomehypothetical protein1e-0858.5
NC_014355:844248:8589768589768601361161Candidatus Nitrospira defluvii, complete genomeUDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase2e-0857.8
NC_010645:73573:9486894868960461179Bordetella avium 197N, complete genomelipopolysaccharide biosynthesis protein4e-0857
NC_008322:1595500:1604416160441616055791164Shewanella sp. MR-7, complete genomeDegT/DnrJ/EryC1/StrS aminotransferase4e-0857
NC_016887:4403872:441971744197174420553837Nocardia cyriacigeorgica GUH-2, complete genomePyridoxal phosphate-dependent aminotransferase6e-0856.2
NC_011297:415760:4349744349744361311158Dictyoglomus thermophilum H-6-12, complete genomeUDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate)aminotransferase)9e-0855.8
NC_014973:1071500:1080891108089110819551065Geobacter sp. M18 chromosome, complete genomeglutamine--scyllo-inositol transaminase1e-0755.1
NC_009615:3308538:3327871332787133290011131Parabacteroides distasonis ATCC 8503 chromosome, complete genomeaminotransferase2e-0754.7
NC_016609:8271000:8284235828423582853561122Niastella koreensis GR20-10 chromosome, complete genomeglutamine--scyllo-inositol transaminase2e-0754.7
NC_010814:794211:8119388119388130441107Geobacter lovleyi SZ, complete genomeGlutamine--scyllo-inositol transaminase2e-0754.3
NC_019673:2671458:2677077267707726781711095Saccharothrix espanaensis DSM 44229 complete genomePleiotropic regulatory protein2e-0754.3
NC_016616:49388:7909379093802531161Dechlorosoma suillum PS chromosome, complete genomeUDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase2e-0754.3
NC_014394:707305:7073057073057084261122Gallionella capsiferriformans ES-2 chromosome, complete genomeGlutamine--scyllo-inositol transaminase3e-0753.9
NC_009454:2663539:2680416268041626815431128Pelotomaculum thermopropionicum SI, complete genomepyridoxal phosphate-dependent enzyme4e-0753.5
NC_015577:1794560:1829539182953918307201182Treponema azotonutricium ZAS-9 chromosome, complete genomeUDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase5e-0753.1
NC_008609:3119502:3145185314518531463001116Pelobacter propionicus DSM 2379, complete genomeDegT/DnrJ/EryC1/StrS aminotransferase6e-0752.8
NC_007759:2608173:2630586263058626317701185Syntrophus aciditrophicus SB, complete genomepleiotrophic regulatory protein8e-0752.8
NC_014972:322056:3439703439703451001131Desulfobulbus propionicus DSM 2032 chromosome, complete genomeglutamine--scyllo-inositol transaminase9e-0752.4
NC_012856:604767:6170326170326181801149Ralstonia pickettii 12D chromosome 1, complete genomeDegT/DnrJ/EryC1/StrS aminotransferase1e-0651.6
NC_013960:379461:3935973935973947571161Nitrosococcus halophilus Nc4 chromosome, complete genomeDegT/DnrJ/EryC1/StrS aminotransferase1e-0651.6
NC_009092:1504363:1532052153205215332181167Shewanella loihica PV-4, complete genomeDegT/DnrJ/EryC1/StrS aminotransferase1e-0651.6
NC_013665:849508:8966058966058976901086Methanocella paludicola SANAE, complete genomeputative aminotransferase2e-0651.6
NC_002927:118982:1609701609701622021233Bordetella bronchiseptica RB50, complete genomelipopolysaccharide biosynthesis protein2e-0651.6
NC_017079:5034500:5041721504172150428421122Caldilinea aerophila DSM 14535 = NBRC 104270, complete genomeputative aminotransferase2e-0651.2
NC_015145:4191745:4194556419455641957221167Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomePLP-dependent enzyme possibly involved in cell wall biogenesis2e-0650.8
NC_012856:604767:6315306315306326841155Ralstonia pickettii 12D chromosome 1, complete genomeDegT/DnrJ/EryC1/StrS aminotransferase3e-0650.8
NC_008554:1177199:1195520119552011967131194Syntrophobacter fumaroxidans MPOB, complete genomeDegT/DnrJ/EryC1/StrS aminotransferase4e-0650.4
NC_015276:632206:6434386434386446011164Marinomonas mediterranea MMB-1 chromosome, complete genomeUDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase5e-0650.1
NC_009767:997500:1016687101668710178891203Roseiflexus castenholzii DSM 13941, complete genomeDegT/DnrJ/EryC1/StrS aminotransferase5e-0650.1
NC_010516:2877407:2881331288133128824371107Clostridium botulinum B1 str. Okra, complete genomespore coat polysaccharide biosynthesis protein SpsC5e-0650.1
NC_011831:2410607:2444366244436624455351170Chloroflexus aggregans DSM 9485, complete genomeDegT/DnrJ/EryC1/StrS aminotransferase4e-0650.1
NC_013522:698114:7177937177937189171125Thermanaerovibrio acidaminovorans DSM 6589, complete genomeDegT/DnrJ/EryC1/StrS aminotransferase4e-0650.1
NC_020304:2677372:2693030269303026941871158Desulfocapsa sulfexigens DSM 10523, complete genomeUDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase5e-0649.7
NC_017068:2436960:2489575248957524907231149Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative aminotransferase5e-0649.7
NC_014624:1840209:1857194185719418582881095Eubacterium limosum KIST612 chromosome, complete genomeAChain A9e-0649.3
NC_014761:2189500:2205158220515822063001143Oceanithermus profundus DSM 14977 chromosome, complete genomeudp-4-keto-6-deoxy-n-acetylglucosamine 4-aminotransferase9e-0648.9