Pre_GI Gene

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Host: NC_013410 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013410:2519441 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
251944125220142574radical SAM proteinQuickGO ontologyBLASTP
252207425234291356diguanylate cyclaseQuickGO ontologyBLASTP
252371525250491335ATPase AAAQuickGO ontologyBLASTP
25253952525898504hypothetical proteinBLASTP
25262312527217987hypothetical proteinBLASTP
252732725285261200hypothetical protein
252852625302501725hypothetical protein
25302762531043768glycosyltransferase family proteinQuickGO ontologyBLASTP
25310552531921867family 2 glycosyl transferaseQuickGO ontologyBLASTP
253209625338531758hydrolase HAD superfamily-like proteinQuickGO ontologyBLASTP
253385625349261071family 2 glycosyl transferaseQuickGO ontologyBLASTP
25349292535846918hypothetical proteinBLASTP
25358482536603756hypothetical proteinBLASTP
25366482537607960polysaccharide pyruvyl transferaseQuickGO ontologyBLASTP
253760425387131110radical SAM proteinQuickGO ontologyBLASTP
25387172539484768hypothetical protein
253948125410101530polysaccharide biosynthesis proteinQuickGO ontologyBLASTP
25412072541428222hypothetical proteinBLASTP
25414212541984564hypothetical proteinBLASTP
25419752542229255hypothetical proteinBLASTP
25421862543106921family 2 glycosyl transferaseQuickGO ontologyBLASTP
254310725443301224oxidoreductase domain-containing proteinQuickGO ontologyBLASTP
254433725455601224phosphoribosylglycinamide synthetaseQuickGO ontologyBLASTP
254556725467121146TDP-4-oxo-6-deoxy-D-glucose transaminaseQuickGO ontologyBLASTP
25467152546834120hypothetical protein
254683125483061476transcriptional regulatorQuickGO ontologyBLASTP
25484772549475999XRE family plasmid maintenance system antidote proteinQuickGO ontologyBLASTP
254947225515082037glycoside hydrolase family proteinQuickGO ontologyBLASTP