Pre_GI: BLASTP Hits

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Query: NC_009512:2108686:2136746 Pseudomonas putida F1, complete genome

Start: 2136746, End: 2137351, Length: 606

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017986:4790482:483635748363574836962606Pseudomonas putida ND6 chromosome, complete genomeTetR family transcriptional regulator9e-112402
NC_009668:1591290:159361715936171594213597Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceTetR family transcriptional regulator1e-42172
NC_008750:2332000:235360923536092354196588Shewanella sp. W3-18-1, complete genometranscriptional regulator, TetR family1e-37155
NC_020181:1653261:166443116644311665033603Enterobacter aerogenes EA1509E, complete genomeTranscriptional regulator, TetR family2e-36152
NC_009436:3807420:382089238208923821488597Enterobacter sp. 638, complete genomeTetR family transcriptional regulator1e-35149
NC_015663:3742738:375320437532043753806603Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein1e-35149
NC_016935:4367000:440472344047234405346624Paenibacillus mucilaginosus 3016 chromosome, complete genomeputative transcriptional regulator5e-2097.4
NC_015690:4643869:466724646672464667818573Paenibacillus mucilaginosus KNP414 chromosome, complete genomeputative transcriptional regulator1e-1892.8
NC_016887:1680338:169295116929511693511561Nocardia cyriacigeorgica GUH-2, complete genometranscriptional regulator TetR family4e-1890.9
NC_008595:1911491:192312819231281923763636Mycobacterium avium 104, complete genometranscriptional regulator, TetR family protein2e-1685.9
NC_016948:1796989:181936118193611819903543Mycobacterium intracellulare MOTT-64 chromosome, complete genomeTetR family transcriptional regulator1e-1376.6
NC_004431:4319152:432716243271624327731570Escherichia coli CFT073, complete genomehypothetical protein2e-1066.2
NC_008563:4707826:472109047210904721461372Escherichia coli APEC O1, complete genomeputative transcriptional repressor2e-1065.9
NC_011745:3405520:341233534123353412706372Escherichia coli ED1a chromosome, complete genomehypothetical protein2e-1065.9
NC_016002:2453919:247109424710942471732639Pseudogulbenkiania sp. NH8B, complete genomeTetR family transcriptional regulator3e-1065.1
NC_009439:918534:937355937355937975621Pseudomonas mendocina ymp, complete genomeTetR family transcriptional regulator5e-1064.3
NC_014659:2737843:273784327378432738469627Rhodococcus equi 103S, complete genomeTetR family transcriptional regulator2e-0962.8
NC_012704:652589:6543696543696554061038Corynebacterium kroppenstedtii DSM 44385, complete genometranscriptional regulator, TetR family2e-0962.4
NC_008570:3220539:327467032746703275311642Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeTetR family regulatory protein7e-0960.5
NC_013595:9994000:100114381001143810012019582Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, TetR family1e-0860.1
NC_020126:7661551:768145276814527682090639Myxococcus stipitatus DSM 14675, complete genomeTetR family transcriptional regulator9e-0960.1
CU928145:4950723:497537349753734976041669Escherichia coli 55989 chromosome, complete genomeputative Transcriptional regulator1e-0859.7
NC_010939:405477:415026415026415694669Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeTransposon Tn10 tetC protein (ORFL)1e-0859.7
NC_011749:34056:427694276943437669Escherichia coli UMN026 plasmid p1ESCUM, complete sequencetranscriptionnal regulator involved in tetracycline resistance1e-0859.7
NC_011748:4950723:497537349753734976041669Escherichia coli 55989, complete genomeputative Transcriptional regulator1e-0859.7
NC_016860:4055117:406238040623804062973594Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein1e-0859.7
NC_017328:1075535:110535211053521105945594Shigella flexneri 2002017 chromosome, complete genomeTransposon Tn10 tetC protein1e-0859.7
NC_020418:448687:460184460184460777594Morganella morganii subsp. morganii KT, complete genomehypothetical protein1e-0859.7
NC_015424:3112637:315280931528093153447639Aeromonas veronii B565 chromosome, complete genomeTetR family transcriptional regulator1e-0859.7
NC_010002:528529:533152533152533817666Delftia acidovorans SPH-1, complete genometranscriptional regulator, TetR family2e-0858.9
NC_009480:99640:128542128542129288747Clavibacter michiganensis subsp. michiganensis NCPPB 382, completetranscriptional regulator, TetR family5e-0857.8
NC_009921:5609770:565205756520575652785729Frankia sp. EAN1pec, complete genometranscriptional regulator, TetR family6e-0857.4
NC_017904:2724941:272761627276162728188573Mycobacterium sp. MOTT36Y chromosome, complete genomeTetR family transcriptional regulator9e-0857
NC_019673:3253650:3274646327464632759411296Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein9e-0857
NC_011896:3204579:322156432215643222274711Mycobacterium leprae Br4923, complete genomeputative TetR-family transcriptional regulator1e-0756.6
NC_002677:3204710:322169532216953222405711Mycobacterium leprae TN, complete genomeputative TetR-family transcriptional regulator1e-0756.6
NC_008752:415599:420283420283420975693Acidovorax avenae subsp. citrulli AAC00-1, complete genometranscriptional regulator, TetR family1e-0756.2
NC_013406:3650300:365940836594083660070663Paenibacillus sp. Y412MC10 chromosome, complete genomeTetR family transcriptional regulator1e-0756.2
NC_015566:1127595:116103711610371161717681Serratia sp. AS12 chromosome, complete genomeTetR family transcriptional regulator2e-0755.8
NC_015567:1127780:116122211612221161902681Serratia sp. AS9 chromosome, complete genomeTetR family transcriptional regulator2e-0755.8
NC_013799:1117750:112189411218941122469576Hydrogenobacter thermophilus TK-6, complete genometranscriptional regulator, TetR family2e-0755.5
NC_017161:1117741:112188511218851122460576Hydrogenobacter thermophilus TK-6 chromosome, complete genomeTetR family transcriptional regulator2e-0755.5
NC_005773:866157:882507882507883145639Pseudomonas syringae pv. phaseolicola 1448A, complete genometranscriptional regulator, TetR family2e-0755.5
NC_008146:2744612:276880427688042769427624Mycobacterium sp. MCS, complete genometranscriptional regulator, TetR family2e-0755.5
NC_008705:2763131:278669227866922787315624Mycobacterium sp. KMS, complete genometranscriptional regulator, TetR family2e-0755.5
NC_016111:2257166:227095022709502271552603Streptomyces cattleya NRRL 8057, complete genomeTetR-family transcriptional regulator4e-0754.7
NC_012982:2772976:278795127879512788670720Hirschia baltica ATCC 49814, complete genometranscriptional regulator, TetR family4e-0754.7
NC_016147:1788219:180650518065051807080576Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeTetR family transcriptional regulator4e-0754.7
NC_016113:887582:9033959033959044771083Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequencelactone-dependent transcriptional regulator5e-0754.3
NC_014915:3320768:336686733668673367790924Geobacillus sp. Y412MC52 chromosome, complete genomeregulatory protein TetR6e-0754.3
NC_009338:955195:971013971013971636624Mycobacterium gilvum PYR-GCK chromosome, complete genomeTetR family transcriptional regulator6e-0753.9
NC_007517:2494000:250784425078442508413570Geobacter metallireducens GS-15, complete genometranscriptional regulator, TetR family1e-0653.5
NC_007953:572926:596866596866597480615Burkholderia xenovorans LB400 chromosome 3, complete sequenceTranscriptional regulator, TetR family9e-0753.5
NC_016629:415711:433527433527434234708Desulfovibrio africanus str. Walvis Bay chromosome, completeTranscriptional regulator TetR1e-0653.1
NC_011000:1262324:126468212646821265407726Burkholderia cenocepacia J2315 chromosome 1, complete sequenceTetR family regulatory protein1e-0653.1
NC_014926:608894:628881628881629447567Thermovibrio ammonificans HB-1 chromosome, complete genometranscriptional regulator, TetR family1e-0653.1
NC_013165:647894:654200654200654871672Slackia heliotrinireducens DSM 20476, complete genometranscriptional regulator1e-0653.1
NC_008268:6149576:615238661523866153054669Rhodococcus sp. RHA1, complete genomeprobable transcriptional regulator, TetR family1e-0652.8
NC_007947:1703326:170922317092231709855633Methylobacillus flagellatus KT, complete genometranscriptional regulator, TetR family2e-0652.8
NC_013665:2132000:213526921352692135904636Methanocella paludicola SANAE, complete genomeTetR family transcriptional regulator2e-0652.4
NC_013385:1007616:100995610099561010600645Ammonifex degensii KC4, complete genometranscriptional regulator, TetR family2e-0652.4
NC_016048:1438721:146311314631131463769657Oscillibacter valericigenes Sjm18-20, complete genomeputative TetR family transcriptional regulator2e-0652.4
NC_004129:3123000:312514131251413125728588Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, TetR family3e-0652
NC_015580:1328361:132836113283611329092732Novosphingobium sp. PP1Y, complete genomeTetR family transcriptional regulator3e-0652
NC_015671:1865752:186928318692831869936654Cellvibrio gilvus ATCC 13127 chromosome, complete genomeregulatory protein TetR3e-0652
NC_014910:465980:472096472096472716621Alicycliphilus denitrificans BC chromosome, complete genomeregulatory protein tetr2e-0652
NC_010688:3515885:352608335260833526709627Xanthomonas campestris pv. campestris, complete genometranscriptional regulator, TetR family2e-0652
NC_003902:1416000:142181514218151422441627Xanthomonas campestris pv. campestris str. ATCC 33913, completetranscriptional regulator2e-0652
NC_007946:4779745:480969748096974810536840Escherichia coli UTI89, complete genomeUidR transriptional regulator3e-0651.6
NC_016629:2971860:298265329826532983267615Desulfovibrio africanus str. Walvis Bay chromosome, completetranscriptional regulator, TetR family4e-0651.6
NC_008278:2732890:274044927404492741114666Frankia alni ACN14a, complete genomehypothetical protein5e-0651.2
NC_008253:3941938:396844639684463969285840Escherichia coli 536, complete genomeputative transcription regulator protein5e-0651.2
NC_016111:6222461:6231155623115562325131359Streptomyces cattleya NRRL 8057, complete genomeKsbA4e-0651.2
NC_014966:795311:818849818849819574726Vibrio vulnificus MO6-24/O chromosome II, complete sequenceTetR family transcripitonal regulator5e-0650.8
NC_019673:7598026:760271776027177603478762Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, TetR family6e-0650.8
NC_008268:6149576:615316961531696153810642Rhodococcus sp. RHA1, complete genomepossible transcriptional regulator, TetR family6e-0650.8
NC_016582:175589:194439194439195059621Streptomyces bingchenggensis BCW-1 chromosome, complete genomeTetR family transcriptional regulator7e-0650.4
NC_014834:2264108:229729222972922298074783Rhodopseudomonas palustris DX-1 chromosome, complete genomeTetR family transcriptional regulator8e-0650.4
NC_017186:5184000:518529851852985185831534Amycolatopsis mediterranei S699 chromosome, complete genomeTetR family transcriptional regulator8e-0650.4
NC_014318:5183975:518526451852645185797534Amycolatopsis mediterranei U32 chromosome, complete genomeTetR family transcriptional regulator8e-0650.4