Pre_GI: BLASTP Hits

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Query: NC_009089:1093832:1094548 Clostridium difficile 630, complete genome

Start: 1094548, End: 1095342, Length: 795

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013315:1679000:168033416803341681137804Clostridium difficile CD196 chromosome, complete genomephage anti-repressor5e-76284
NC_017297:2531750:256812225681222568973852Clostridium botulinum F str. 230613 chromosome, complete genomehypothetical protein6e-71267
NC_009699:2552195:256798325679832568834852Clostridium botulinum F str. Langeland chromosome, complete genomehypothetical protein6e-71267
NC_008497:1111891:113078911307891131571783Lactobacillus brevis ATCC 367, complete genomePhage anti-repressor protein2e-52206
NC_010516:2676746:270857727085772709377801Clostridium botulinum B1 str. Okra, complete genomephage protein6e-44177
NC_015425:1295261:129889312988931299675783Clostridium botulinum BKT015925 chromosome, complete genomephage protein1e-43176
NC_012563:2680246:269385026938502694623774Clostridium botulinum A2 str. Kyoto, complete genomeGp26 protein2e-43176
NC_009706:3291330:332760733276073328413807Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein4e-35148
NC_011837:3226500:325910932591093259915807Clostridium kluyveri NBRC 12016, complete genomehypothetical protein4e-35148
NC_008526:506263:507157507157507915759Lactobacillus casei ATCC 334, complete genomePhage anti-repressor protein6e-33140
NC_010999:561914:565165565165565905741Lactobacillus casei, complete genomeAnti-repressor7e-33140
NC_012984:1027898:102877910287791029513735Lactobacillus plantarum JDM1, complete genomePhage anti-repressor protein6e-29127
NC_015761:1017301:102079710207971021369573Salmonella bongori NCTC 12419, complete genomebacteriophage protein1e-22106
NC_007384:2933625:293551829355182936279762Shigella sonnei Ss046, complete genomeputative bacteriophage protein2e-22106
NC_016822:3065426:306682230668223067385564Shigella sonnei 53G, complete genomebacteriophage protein2e-22106
NC_011080:2761403:276209827620982762661564Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein3e-22105
NC_016856:2812905:281360028136002814163564Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Santirepressor-like protein3e-22105
NC_017046:2756000:275913127591312759694564Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage protein3e-22105
NC_008527:1036757:104033510403351041057723Lactococcus lactis subsp. cremoris SK11, complete genomePhage anti-repressor protein1e-21103
NC_007712:4023516:405624040562404057010771Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein1e-21103
NC_011094:638552:655772655772656566795Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein1e-20100
NC_011415:2277559:229645222964522297246795Escherichia coli SE11 chromosome, complete genomehypothetical protein2e-1996.3
NC_009801:2193000:221002722100272210821795Escherichia coli E24377A, complete genomehypothetical protein2e-1996.3
NC_007712:3067000:309322930932293094017789Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein5e-1891.7
NC_009436:1141376:115310011531001153813714Enterobacter sp. 638, complete genomehypothetical protein3e-1789
NC_003198:1908238:191455719145571915114558Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative bacteriophage protein4e-1788.6
NC_013361:1558423:157622315762231576957735Escherichia coli O26:H11 str. 11368 chromosome, complete genomeantirepressor protein1e-1480.1
NC_006322:1415863:142817314281731428907735Bacillus licheniformis ATCC 14580, complete genomehypothetical protein1e-1480.1
NC_006270:1415001:142731014273101428044735Bacillus licheniformis ATCC 14580, complete genomephage related protein1e-1480.1
NC_007712:2806500:281664828166482816857210Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein1e-1067
NC_009674:2985878:301778330177833018619837Bacillus cytotoxicus NVH 391-98 chromosome, complete genomehypothetical protein1e-0963.5
NC_010674:2011403:202409820240982024877780Clostridium botulinum B str. Eklund 17B, complete genomehypothetical protein8e-0754.3