Pre_GI: BLASTP Hits

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Query: NC_008228:2295841:2307306 Pseudoalteromonas atlantica T6c, complete genome

Start: 2307306, End: 2307635, Length: 330

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006351:73000:967419674197067327Burkholderia pseudomallei K96243 chromosome 2, complete sequencethioredoxin4e-26116
NC_009075:92210:116067116067116393327Burkholderia pseudomallei 668 chromosome II, complete sequencethioredoxin4e-26116
NC_007435:1914375:193526319352631935589327Burkholderia pseudomallei 1710b chromosome II, complete sequencethioredoxin4e-26116
NC_009078:74954:961859618596511327Burkholderia pseudomallei 1106a chromosome II, complete sequencethioredoxin4e-26116
NC_014924:2399524:240285524028552403184330Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeputative thioredoxin3e-25113
NC_010552:196457:211609211609212016408Burkholderia ambifaria MC40-6 chromosome 2, complete sequencehypothetical protein9e-24108
NC_016147:151224:175864175864176199336Pseudoxanthomonas spadix BD-a59 chromosome, complete genomethiol-disulfide isomerase/thioredoxin3e-23107
NC_015499:1403447:141993914199391420250312Thermodesulfobium narugense DSM 14796 chromosome, complete genomethioredoxin9e-1062.4
NC_020291:5752099:576770257677025768010309Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomethioredoxin TrxA1e-0858.5
NC_011896:3252925:3258118325811832594941377Mycobacterium leprae Br4923, complete genomebifunctional thioredoxin reductase/thioredoxin2e-0857.8
NC_002677:3253057:3258250325825032596261377Mycobacterium leprae TN, complete genomebifunctional thioredoxin reductase/thioredoxin2e-0857.8
NC_013173:1231213:124439012443901244710321Desulfomicrobium baculatum DSM 4028, complete genomethioredoxin3e-0857.4
NC_015573:1979202:199762919976291997946318Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomethioredoxin7e-0855.8
NC_007948:3541987:356307035630703563507438Polaromonas sp. JS666, complete genomethioredoxin2e-0754.7
NC_013929:9450747:945339294533929453841450Streptomyces scabiei 87.22 chromosome, complete genomethioredoxin 24e-0753.5
NC_020409:329915:338253338253338573321Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeThioredoxin-14e-0753.5
NC_014221:169996:174418174418174750333Truepera radiovictrix DSM 17093 chromosome, complete genomethioredoxin4e-0753.5
NC_017059:967309:967309967309968235927Rhodospirillum photometricum DSM 122, complete genomeThioredoxin-related5e-0753.1
NC_008261:2920999:293669729366972937011315Clostridium perfringens ATCC 13124, complete genomethioredoxin5e-0753.1
NC_007645:6647500:667723766772376677671435Hahella chejuensis KCTC 2396, complete genomethioredoxin-disulfide reductase5e-0753.1
CP002185:2889656:288965628896562890075420Escherichia coli W, complete genomethioredoxin 21e-0652
CP002516:1196000:121578112157811216200420Escherichia coli KO11, complete genomethioredoxin1e-0652
CU928160:2785792:278579227857922786211420Escherichia coli IAI1 chromosome, complete genomethioredoxin 21e-0652
NC_007519:3355768:337799233779923378432441Desulfovibrio alaskensis G20 chromosome, complete genomethioredoxin1e-0652
NC_013131:7401253:742255874225587423040483Catenulispora acidiphila DSM 44928, complete genomethioredoxin1e-0651.6
NC_015312:3675148:372497937249793725365387Pseudonocardia dioxanivorans CB1190 chromosome, complete genomethioredoxin1e-0651.6
NC_014540:2908912:2920031292003129212571227Burkholderia sp. CCGE1003 chromosome 2, complete sequencethioredoxin2e-0651.2
NC_009464:1804791:182493318249331825274342Uncultured methanogenic archaeon RC-I, complete genomethioredoxin2e-0651.2
NC_014960:1670778:168546616854661685819354Anaerolinea thermophila UNI-1, complete genomethioredoxin2e-0651.2
NC_015681:1201926:121996412199641220287324Thermodesulfatator indicus DSM 15286 chromosome, complete genomethioredoxin4e-0650.4
NC_006905:2805877:280587728058772806296420Salmonella enterica subsp. enterica serovar Choleraesuis strthioredoxin 2, redox factor3e-0650.4
NC_010102:283364:302564302564302983420Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-0650.4
NC_011080:2789744:279098527909852791404420Salmonella enterica subsp. enterica serovar Newport str. SL254,putative thioredoxin3e-0650.4
NC_011149:2701916:270191627019162702335420Salmonella enterica subsp. enterica serovar Agona str. SL483,putative thioredoxin3e-0650.4
NC_010519:275976:299712299712300035324Haemophilus somnus 2336 chromosome, complete genomethioredoxin3e-0650.4
NC_010793:30488:391713917139497327Orientia tsutsugamushi str. Ikeda, complete genomethioredoxin5e-0650.1
NC_007794:262402:284887284887285792906Novosphingobium aromaticivorans DSM 12444, complete genomethioredoxin6e-0649.7
NC_010475:1671823:169399816939981694321324Synechococcus sp. PCC 7002, complete genomethioredoxin7e-0649.3
NC_020541:2850831:285083128508312851274444Rhodanobacter sp. 2APBS1, complete genomethioredoxin8e-0649.3
NC_014935:1511835:153086715308671531247381Nitratifractor saLSUginis DSM 16511 chromosome, complete genomethioredoxin8e-0649.3
NC_014215:1929000:194297019429701943395426Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,Thioredoxin9e-0648.9