Pre_GI: BLASTP Hits

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Query: NC_004741:366822:380831 Shigella flexneri 2a str. 2457T, complete genome

Start: 380831, End: 381445, Length: 615

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:385552:399562399562400176615Shigella flexneri 2002017 chromosome, complete genomeCytochrome o ubiquinol oxidase subunit 33e-100363
NC_008258:401786:419349419349419963615Shigella flexneri 5 str. 8401, complete genomecytochrome o ubiquinol oxidase subunit III3e-100363
NC_004337:367687:381698381698382312615Shigella flexneri 2a str. 301, complete genomecytochrome o ubiquinol oxidase subunit III3e-100363
NC_015663:2694373:272570627257062726317612Enterobacter aerogenes KCTC 2190 chromosome, complete genomecytochrome o ubiquinol oxidase subunit III2e-94345
NC_020181:2714559:271952727195272720402876Enterobacter aerogenes EA1509E, complete genomeCytochrome O ubiquinol oxidase subunit III7e-94342
NC_004129:5781413:579255157925515793177627Pseudomonas fluorescens Pf-5, complete genomecytochrome o ubiquinol oxidase, subunit III3e-74277
NC_012779:2127542:213849821384982139115618Edwardsiella ictaluri 93-146, complete genomecytochrome o ubiquinol oxidase, subunit III, putative2e-70265
NC_009654:91096:102866102866103477612Marinomonas sp. MWYL1, complete genomecytochrome o ubiquinol oxidase subunit III1e-68258
NC_010943:1379707:139674013967401397378639Stenotrophomonas maltophilia K279a, complete genomeputative quinol oxidase subunit 32e-64245
NC_015497:3614817:362317336231733623820648Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomecytochrome o ubiquinol oxidase, subunit III3e-61234
NC_015723:1047418:105053310505331051189657Cupriavidus necator N-1 chromosome 2, complete sequencecytochrome o ubiquinol oxidase subunit2e-59228
NC_007508:1446526:146733514673351467961627Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomecytochrome O ubiquinol oxidase subunit III5e-59227
NC_016632:1049510:104890310489031049520618Serratia symbiotica str. 'Cinara cedri' chromosome, completecytochrome o ubiquinol oxidase subunit III9e-55213
NC_014910:2045088:206447120644712065103633Alicycliphilus denitrificans BC chromosome, complete genomecytochrome o ubiquinol oxidase, subunit iii3e-54211
NC_015422:2326942:234783423478342348466633Alicycliphilus denitrificans K601 chromosome, complete genomecytochrome o ubiquinol oxidase subunit III3e-54211
NC_005955:139907:153917153917154582666Bartonella quintana str. Toulouse, complete genomeCytochrome o ubiquinol oxidase subunit III2e-48191
NC_020300:131782:146048146048146713666Bartonella australis Aust/NH1, complete genomecytochrome o ubiquinol oxidase subunit III2e-47188
NC_005956:152497:166493166493167158666Bartonella henselae str. Houston-1, complete genomeCytochrome o ubiquinol oxidase subunit III1e-45182
NC_015675:4493758:449623544962354496921687Mesorhizobium opportunistum WSM2075 chromosome, complete genomecytochrome c oxidase subunit III2e-45181
NC_013205:526281:570422570422571030609Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,cytochrome c oxidase subunit III1e-43176
NC_017253:509494:515090515090515737648Buchnera aphidicola str. JF99 (Acyrthosiphon pisum) chromosome,cytochrome O ubiquinol oxidase subunit III9e-43173
NC_002528:505951:514189514189514806618Buchnera aphidicola str. APS (Acyrthosiphon pisum), completecytochrome O ubiquinol oxidase subunit III1e-42172
NC_004061:498483:515322515322515891570Buchnera aphidicola str. Sg (Schizaphis graminum), complete genomecytochrome O ubiquinol oxidase C1e-41169
NC_017256:515579:514965514965515582618Buchnera aphidicola str. Ak (Acyrthosiphon kondoi) chromosome,cytochrome O ubiquinol oxidase subunit III3e-41167
NC_017190:1465079:152565915256591526282624Bacillus amyloliquefaciens LL3 chromosome, complete genomecytochrome caa3 oxidase (subunit III)2e-40165
NC_020164:1784223:180459018045901805195606Staphylococcus warneri SG1, complete genomeputative quinol oxidase polypeptide III2e-38158
NC_017259:480656:493088493088493708621Buchnera aphidicola str. Ua (Uroleucon ambrosiae) chromosome,cytochrome O ubiquinol oxidase subunit III3e-37154
NC_002976:638799:638204638204638809606Staphylococcus epidermidis RP62A, complete genomequinol oxidase, subunit III1e-36152
NC_004461:746284:745689745689746294606Staphylococcus epidermidis ATCC 12228, complete genomequinol oxidase polypeptide III QoxC1e-36152
NC_018677:111500:145982145982146527546Candidatus Portiera aleyrodidarum BT-B-HRs chromosome, completeCytochrome O ubiquinol oxidase subunit III2e-35149
NC_015850:169180:189558189558190196639Acidithiobacillus caldus SM-1 chromosome, complete genomecytochrome O ubiquinol oxidase subunit III6e-31133
NC_015942:1047576:105707210570721057710639Acidithiobacillus ferrivorans SS3 chromosome, complete genomecytochrome c oxidase subunit III3e-29128
NC_015850:2259769:227444422744442275079636Acidithiobacillus caldus SM-1 chromosome, complete genomecytochrome O ubiquinol oxidase subunit III6e-28124
NC_009523:2769154:279269627926962793304609Roseiflexus sp. RS-1 chromosome, complete genomecytochrome c oxidase subunit III5e-2097.4
NC_016802:1615748:162572816257281626318591Corynebacterium diphtheriae HC02 chromosome, complete genomecytochrome C oxidase subunit III1e-1996.3
NC_003888:2305901:231362323136232314243621Streptomyces coelicolor A3(2), complete genomecytochrome c oxidase subunit III2e-1995.5
NC_018750:2005229:201485620148562015476621Streptomyces venezuelae ATCC 10712, complete genomeCytochrome c oxidase polypeptide III6e-1890.9
NC_010572:6293417:630507263050726305692621Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative cytochrome c oxidase subunit III1e-1789.4
NC_004369:2203947:221417622141762214829654Corynebacterium efficiens YS-314, complete genomeputative cytochrome c oxidase subunit III2e-1789
NC_011884:1029328:104920810492081049834627Cyanothece sp. PCC 7425, complete genomecytochrome c oxidase subunit III3e-1788.6
NC_010511:4313769:434165843416584342380723Methylobacterium sp. 4-46 chromosome, complete genomecytochrome c oxidase subunit III2e-1788.6
NC_015387:1965711:197311319731131973781669Marinithermus hydrothermalis DSM 14884 chromosome, complete genomecytochrome c oxidase subunit III5e-1787.8
NC_010617:1428902:143564914356491436287639Kocuria rhizophila DC2201, complete genomecytochrome c oxidase subunit III9e-1786.7
NC_015588:1965787:197156319715631972165603Isoptericola variabilis 225 chromosome, complete genomeCytochrome-c oxidase1e-1686.7
NC_021177:1922930:193240019324001933020621Streptomyces fulvissimus DSM 40593, complete genomeCytochrome c oxidase subunit III2e-1685.9
NC_014012:207289:223195223195224070876Shewanella violacea DSS12, complete genomecytochrome c oxidase subunit III3e-1685.1
NC_014151:2312000:231790123179012318548648Cellulomonas flavigena DSM 20109 chromosome, complete genomeCytochrome-c oxidase3e-1685.1
NC_015953:1756493:176297917629791763599621Streptomyces sp. SirexAA-E chromosome, complete genomeCytochrome-c oxidase3e-1684.7
NC_015514:2414617:242209724220972422723627Cellulomonas fimi ATCC 484 chromosome, complete genomecytochrome-c oxidase6e-1684
NC_019673:1656680:167746916774691678077609Saccharothrix espanaensis DSM 44229 complete genomeputative cytochrome c oxidase subunit 39e-1683.6
NC_014643:2056280:215095921509592151516558Rothia dentocariosa ATCC 17931 chromosome, complete genomecytochrome c oxidase subunit III5e-1581.3
NC_015671:1540860:155556815555681556215648Cellvibrio gilvus ATCC 13127 chromosome, complete genomeCytochrome-c oxidase1e-1480.1
NC_009465:29735:378063780638690885Candidatus Vesicomyosocius okutanii HA, complete genomecytochrome c oxidase subunit III1e-1479.3
NC_016830:81382:978949789498781888Pseudomonas fluorescens F113 chromosome, complete genomeprotein CoIII1e-1479.3
NC_015379:89441:112405112405113292888Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative cytochrome-c oxidase, subunit III3e-1478.2
NC_009338:2925286:296654129665412967134594Mycobacterium gilvum PYR-GCK chromosome, complete genomecytochrome c oxidase subunit III8e-1477
NC_009664:3718927:373628137362813736940660Kineococcus radiotolerans SRS30216, complete genomecytochrome c oxidase subunit III8e-1477
NC_014210:3742112:375285837528583753484627Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,Cytochrome-c oxidase2e-1375.9
NC_013169:1661135:166443316644331665086654Kytococcus sedentarius DSM 20547, complete genomeheme/copper-type cytochrome/quinol oxidase, subunit 33e-1375.1
NC_016929:197403:197403197403198254852Rickettsia canadensis str. CA410 chromosome, complete genomecytochrome c oxidase subunit III4e-1374.7
NC_015731:402280:414138414138414995858Nitrosomonas sp. Is79A3 chromosome, complete genomecytochrome c oxidase subunit III3e-1374.7
NC_012803:1302261:130652713065271307165639Micrococcus luteus NCTC 2665, complete genomeheme/copper-type cytochrome/quinol oxidase, subunit 36e-1373.9
NC_014831:1906691:192768319276831928249567Thermaerobacter marianensis DSM 12885 chromosome, complete genomecytochrome c oxidase subunit III9e-1373.6
NC_009883:343067:347761347761348594834Rickettsia bellii OSU 85-389, complete genomeCytochrome c oxidase subunit III1e-1273.2
NC_007940:1178000:119354811935481194381834Rickettsia bellii RML369-C, complete genomeCytochrome c oxidase subunit III1e-1272.8
NC_015914:2658845:267263626726362673406771Cyclobacterium marinum DSM 745 chromosome, complete genomecytochrome c oxidase subunit III1e-1272.8
NC_009488:1430693:145809414580941458918825Orientia tsutsugamushi str. Boryong, complete genomecytochrome c oxidase subunit III5e-1270.9
NC_004757:1089057:110039011003901101235846Nitrosomonas europaea ATCC 19718, complete genomeCytochrome c oxidase, subunit III5e-1270.9
NC_013730:6901725:691454369145436915340798Spirosoma linguale DSM 74, complete genomecytochrome c oxidase subunit III5e-1270.9
NC_007484:1355880:136609513660951366739645Nitrosococcus oceani ATCC 19707, complete genomecytochrome/quinol oxidase subunit 31e-1169.7
NC_006396:2057209:2057209205720920597732565Haloarcula marismortui ATCC 43049 chromosome I, complete sequencecytochrome c oxidase subunit I2e-1169.3
NC_018645:1798874:180054318005431801139597Desulfobacula toluolica Tol2, complete genomecytochrome c oxidase subunit III CtaE2e-1168.9
NC_010547:31444:515715157152185615Cyanothece sp. ATCC 51142 chromosome linear, complete sequencecytochrome c oxidase subunit III2e-1168.9
NC_007484:3429140:343917034391703440036867Nitrosococcus oceani ATCC 19707, complete genomeCytochrome c oxidase, subunit III4e-1168.2
NC_006370:166000:174467174467175384918Photobacterium profundum SS9 chromosome 1, complete sequenceputative cytochrome c oxidase subunit III4e-1167.8
NC_019962:2189432:218943221894322190331900Natrinema pellirubrum DSM 15624, complete genomeheme/copper-type cytochrome/quinol oxidase, subunit 35e-1167.8
NC_019964:1961237:1975947197594719786402694Halovivax ruber XH-70, complete genomeheme/copper-type cytochrome/quinol oxidase, subunit 15e-1167.8
NC_006833:902744:906600906600907418819Wolbachia endosymbiont strain TRS of Brugia malayi, completeCytochrome c oxidase, subunit 36e-1167.4
NC_014315:3278386:328544432854443286310867Nitrosococcus watsoni C-113 chromosome, complete genomecytochrome c oxidase1e-1066.6
NC_013922:230842:2565412565412590242484Natrialba magadii ATCC 43099 chromosome, complete genomecytochrome c oxidase subunit I1e-1066.2
NC_015703:3444025:345688334568833457644762Runella slithyformis DSM 19594 chromosome, complete genomecytochrome c oxidase subunit III2e-1065.9
NC_013743:1937125:195589419558941956853960Haloterrigena turkmenica DSM 5511, complete genomeCytochrome-c oxidase2e-1065.9
NC_016510:1072709:107781710778171078395579Flavobacterium columnare ATCC 49512 chromosome, complete genomecytochrome c oxidase3e-1065.5
NC_020054:1335699:134975213497521350537786Fibrella aestuarina BUZ 2 drat genomecytochrome c oxidase subunit III3e-1065.1
NC_008595:1911491:192615519261551926667513Mycobacterium avium 104, complete genomecytochrome c oxidase, subunit III family protein3e-1065.1
NC_009075:937782:967361967361967990630Burkholderia pseudomallei 668 chromosome II, complete sequencecytochrome c oxidase, subunit III6e-1064.3
NC_007435:2701242:273162427316242732253630Burkholderia pseudomallei 1710b chromosome II, complete sequencecytochrome c oxidase, subunit III family protein9e-1063.5
NC_009078:862796:893230893230893859630Burkholderia pseudomallei 1106a chromosome II, complete sequencecytochrome c oxidase, subunit III9e-1063.5
NC_015656:1653450:166373216637321664352621Frankia symbiont of Datisca glomerata chromosome, complete genomecytochrome c oxidase subunit III9e-1063.5
NC_008312:409830:427229427229427843615Trichodesmium erythraeum IMS101, complete genomecytochrome c oxidase, subunit III1e-0963.2
NC_006351:881655:912150912150912743594Burkholderia pseudomallei K96243 chromosome 2, complete sequencecytochrome c oxidase subunit III protein1e-0963.2
NC_013959:1059004:110630211063021106889588Sideroxydans lithotrophicus ES-1 chromosome, complete genomecytochrome c oxidase subunit III2e-0962.8
NC_015703:3444025:345625434562543456838585Runella slithyformis DSM 19594 chromosome, complete genomecytochrome c oxidase subunit III2e-0962.4
NC_002977:925588:929111929111929977867Methylococcus capsulatus str. Bath, complete genomecytochrome c oxidase, subunit III2e-0859.3
NC_015656:3200500:320820632082063208805600Frankia symbiont of Datisca glomerata chromosome, complete genomecytochrome c oxidase subunit III3e-0858.5
NC_019974:1909244:1935497193549719379712475Natronococcus occultus SP4, complete genomeheme/copper-type cytochrome/quinol oxidase, subunit 16e-0857.4
NC_013009:608515:611065611065611886822Neorickettsia risticii str. Illinois, complete genomecytochrome c oxidase subunit III9e-0857
NC_017278:48630:5324753247556222376Thermus sp. CCB_US3_UF1 chromosome, complete genomeCytochrome c oxidase polypeptide I+III1e-0756.2
NC_007798:586500:593233593233594057825Neorickettsia sennetsu str. Miyayama, complete genomecytochrome c oxidase, subunit III2e-0755.8
NC_014315:1169910:119978911997891200433645Nitrosococcus watsoni C-113 chromosome, complete genomecytochrome c oxidase subunit III3e-0755.1
NC_015387:1965711:1970351197035119727352385Marinithermus hydrothermalis DSM 14884 chromosome, complete genomecytochrome c oxidase, subunit I6e-0753.9
NC_013894:1380564:140442814044281405219792Thermocrinis albus DSM 14484 chromosome, complete genomecytochrome c oxidase subunit III1e-0653.1
NC_013730:6901725:691393769139376914527591Spirosoma linguale DSM 74, complete genomecytochrome c oxidase subunit III1e-0653.1
NC_020054:1335699:134914313491431349736594Fibrella aestuarina BUZ 2 drat genomecytochrome c oxidase subunit III4e-0651.6