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Query: NC_004578:5269194 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5269194, End: 5296104, Length: 26911

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_007005:51274145127414515430626893Pseudomonas syringae pv. syringae B728a, complete genome02385BLASTN svgBLASTP svg
NC_004578:5336773*5336773541660879836Pseudomonas syringae pv. tomato str. DC3000, complete genome8e-44186BLASTN svgBLASTP svg
NC_004578:93486793486796406929203Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-38168BLASTN svgBLASTP svg
NC_004547:667988*66798869597327986Erwinia carotovora subsp. atroseptica SCRI1043, complete genome4e-33151BLASTN svgBLASTP svg
NC_013855:19677819677823386637089Azospirillum sp. B510 plasmid pAB510a, complete sequence2e-29139BLASTN svgBLASTP svg
NC_005773:1333863*1333863135559921737Pseudomonas syringae pv. phaseolicola 1448A, complete genome2e-26129BLASTN svgBLASTP svg
NC_004578:59167115916711594513828428Pseudomonas syringae pv. tomato str. DC3000, complete genome1e-24123BLASTN svgBLASTP svg
NC_014391:26513152651315269455543241Micromonospora aurantiaca ATCC 27029 chromosome, complete genome2e-20109BLASTN svgBLASTP svg
NC_004578:4708220*4708220473152123302Pseudomonas syringae pv. tomato str. DC3000, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_009142:45718894571889461144339555Saccharopolyspora erythraea NRRL 2338, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_007005:51543175154317518283828522Pseudomonas syringae pv. syringae B728a, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_005773:866157*86615792659960443Pseudomonas syringae pv. phaseolicola 1448A, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_013093:30684863068486311387545390Actinosynnema mirum DSM 43827, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_009921:57874375787437580894021504Frankia sp. EAN1pec, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_004578:895019*89501992169226674Pseudomonas syringae pv. tomato str. DC3000, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_013440:39770973977097405558678490Haliangium ochraceum DSM 14365, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_010572:73042907304290735268448395Streptomyces griseus subsp. griseus NBRC 13350, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_003155:11378171137817120257364757Streptomyces avermitilis MA-4680, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_015957:61193466119346619590076555Streptomyces violaceusniger Tu 4113 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_019950:33064193306419333122724809Mycobacterium canettii CIPT 140060008 complete genome2e-1075.8BLASTN svgBLASTP svg
NC_000962:32884643288464331029721834Mycobacterium tuberculosis H37Rv, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002755:32827853282785330371920935Mycobacterium tuberculosis CDC1551, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002945:32462783246278326609919822Mycobacterium bovis AF2122/97, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008769:32424533242453326356021108Mycobacterium bovis BCG str. Pasteur 1173P2, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_009525:33004563300456332228921834Mycobacterium tuberculosis H37Ra, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_009565:32999373299937332177021834Mycobacterium tuberculosis F11, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_012207:32374403237440325728519846Mycobacterium bovis BCG str. Tokyo 172, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015848:33437313343731336691823188Mycobacterium canettii CIPT 140010059, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015957:45464034546403458592939527Streptomyces violaceusniger Tu 4113 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_008278:2772726*2772726280322330498Frankia alni ACN14a, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_004578:40613724061372409399732626Pseudomonas syringae pv. tomato str. DC3000, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_008700:36923333692333371504922717Shewanella amazonensis SB2B, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_015957:45255804525580455677331194Streptomyces violaceusniger Tu 4113 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_015957:42928194292819431625023432Streptomyces violaceusniger Tu 4113 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013947:44133824413382443709923718Stackebrandtia nassauensis DSM 44728 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_008095:5585346*5585346562741242067Myxococcus xanthus DK 1622, complete genome8e-0763.9BLASTN svgBLASTP svg