Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:4708220 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
4708220471052023015-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferaseQuickGO ontologyBLASTP
47106274711544918transcriptional activator MetRQuickGO ontologyBLASTP
47115994712009411mutTnudix family proteinQuickGO ontologyBLASTP
471200647130971092D-alanylalanine synthetaseQuickGO ontologyBLASTP
47132494713530282ribosomal protein L31QuickGO ontologyBLASTP
47136034713803201hypothetical protein
471382547149551131hypothetical proteinBLASTP
47150514715731681hypothetical proteinBLASTP
47160784716731654hypothetical proteinBLASTP
47169494717662714hypothetical proteinBLASTP
47178414718530690hypothetical proteinBLASTP
47185814719450870hypothetical proteinBLASTP
471983047229673138hypothetical proteinBLASTP
47230464723645600hypothetical proteinBLASTP
47236424724409768iron utilization protein putativeQuickGO ontologyBLASTP
47244314725090660hypothetical proteinBLASTP
47251614725529369hypothetical proteinBLASTP
472600647282492244glucose dehydrogenaseQuickGO ontologyBLASTP
472902547302211197hypothetical proteinBLASTP
473021847312251008cobalamin synthesis proteinP47K family proteinQuickGO ontologyBLASTP
47312224731521300hypothetical proteinBLASTP