Pre_GI: BLASTN Hits

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Query: NC_005126:1315474 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 1315474, End: 1351501, Length: 36028

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_012962:3864000*3864000389221428215Photorhabdus asymbiotica, complete genome015360BLASTN svgBLASTP svg
NC_005126:58900058900061853029531Photorhabdus luminescens subsp. laumondii TTO1, complete genome015040BLASTN svgBLASTP svg
NC_005126:12650711265071131880053730Photorhabdus luminescens subsp. laumondii TTO1, complete genome010390BLASTN svgBLASTP svg
NC_005126:43337674333767439509961333Photorhabdus luminescens subsp. laumondii TTO1, complete genome08078BLASTN svgBLASTP svg
NC_005126:42105004210500424678336284Photorhabdus luminescens subsp. laumondii TTO1, complete genome06889BLASTN svgBLASTP svg
NC_005126:16138181613818165143837621Photorhabdus luminescens subsp. laumondii TTO1, complete genome05642BLASTN svgBLASTP svg
NC_012962:16616831661683171390552223Photorhabdus asymbiotica, complete genome02795BLASTN svgBLASTP svg
NC_012962:48489948489951520630308Photorhabdus asymbiotica, complete genome02734BLASTN svgBLASTP svg
NC_012962:25877562587756263945151696Photorhabdus asymbiotica, complete genome02718BLASTN svgBLASTP svg
NC_012962:34999003499900355871558816Photorhabdus asymbiotica, complete genome02680BLASTN svgBLASTP svg
NC_012912:21741832174183220033726155Dickeya zeae Ech1591, complete genome1e-114422BLASTN svgBLASTP svg
NC_012214:1267589*1267589129886031272Erwinia pyrifoliae Ep1/96, complete genome7e-79303BLASTN svgBLASTP svg
NC_014228:28835002883500292066537166Xenorhabdus nematophila ATCC 19061, complete genome2e-45192BLASTN svgBLASTP svg
NC_004547:38176563817656384109623441Erwinia carotovora subsp. atroseptica SCRI1043, complete genome2e-36163BLASTN svgBLASTP svg
NC_013421:385930*38593040496119032Pectobacterium wasabiae WPP163, complete genome9e-32147BLASTN svgBLASTP svg
NC_012962:34636443463644349841134768Photorhabdus asymbiotica, complete genome4e-28135BLASTN svgBLASTP svg
NC_012962:10681021068102112169753596Photorhabdus asymbiotica, complete genome4e-28135BLASTN svgBLASTP svg
NC_009832:4482500*4482500450993127432Serratia proteamaculans 568, complete genome9e-26127BLASTN svgBLASTP svg
NC_015567:34650034650038359937100Serratia sp. AS9 chromosome, complete genome5e-24121BLASTN svgBLASTP svg
NC_015566:34508434508438359938516Serratia sp. AS12 chromosome, complete genome5e-24121BLASTN svgBLASTP svg
NC_009832:426993*42699345559928607Serratia proteamaculans 568, complete genome5e-24121BLASTN svgBLASTP svg
NC_010102:45570374557037457661219576Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,3e-22115BLASTN svgBLASTP svg
NC_012912:22857782285778231059124814Dickeya zeae Ech1591, complete genome3e-22115BLASTN svgBLASTP svg
NC_014304:77715777159949921785Erwinia billingiae Eb661 plasmid pEB102, complete sequence3e-22115BLASTN svgBLASTP svg
NC_009832:45647524564752461773352982Serratia proteamaculans 568, complete genome8e-20107BLASTN svgBLASTP svg
NC_012214:53700053700055834721348Erwinia pyrifoliae Ep1/96, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_012214:33039553303955332359919645Erwinia pyrifoliae Ep1/96, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_012962:39337153933715398542551711Photorhabdus asymbiotica, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_014121:48950048950052159932100Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete2e-1489.7BLASTN svgBLASTP svg
NC_015566:46621714662171468741325243Serratia sp. AS12 chromosome, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_003198:44534574453457450773054274Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-1179.8BLASTN svgBLASTP svg
NC_014500:25258802525880254587920000Dickeya dadantii 3937 chromosome, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_013716:5201097*5201097527659975503Citrobacter rodentium ICC168, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_012779:2928000*2928000295428726288Edwardsiella ictaluri 93-146, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_003143:64555964555966798722429Yersinia pestis CO92, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_004088:39559333955933398002524093Yersinia pestis KIM, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_005810:32383913238391326081922429Yersinia pestis biovar Microtus str. 91001, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_006155:41055424105542412736821827Yersinia pseudotuberculosis IP 32953, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_008150:35294303529430355292623497Yersinia pestis Antiqua, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_010159:11012411101241112572024480Yersinia pestis Angola, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_010634:40457944045794406762021827Yersinia pseudotuberculosis PB1/+, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_013716:31097003109700314990540206Citrobacter rodentium ICC168, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_013421:2613137*2613137263682223686Pectobacterium wasabiae WPP163, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_003143:27784942778494279956221069Yersinia pestis CO92, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_004088:1851500*1851500188954638047Yersinia pestis KIM, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_005810:25496802549680258809938420Yersinia pestis biovar Microtus str. 91001, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_008149:23373362337336236141524080Yersinia pestis Nepal516, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_008150:22071982207198223127724080Yersinia pestis Antiqua, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_010159:17940001794000181359119592Yersinia pestis Angola, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_013592:21600002160000218320623207Dickeya dadantii Ech586, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_006155:29795002979500301649636997Yersinia pseudotuberculosis IP 32953, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_007508:20727382072738211001837281Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_010465:17907391790739181268021942Yersinia pseudotuberculosis YPIII, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_010634:28946312894631293584741217Yersinia pseudotuberculosis PB1/+, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_013592:45114784511478453986728390Dickeya dadantii Ech586, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_014500:26164232616423264017523753Dickeya dadantii 3937 chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_016010:20597912059791209065330863Xanthomonas axonopodis pv. citrumelo F1 chromosome, complete4e-0661.9BLASTN svgBLASTP svg
NC_004129:195347*19534722067225326Pseudomonas fluorescens Pf-5, complete genome4e-0661.9BLASTN svgBLASTP svg