Pre_GI: BLASTN Hits

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Query: NC_004432:1310322 Mycoplasma penetrans HF-2, complete genome

Start: 1310322, End: 1341724, Length: 31403

Host Lineage: Mycoplasma penetrans; Mycoplasma; Mycoplasmataceae; Mycoplasmatales; Tenericutes; Bacteria

General Information: This strain has been isolated from the tracheal aspirate of a previously healthy HIV-negative patient with severe respiratory symptoms caused by this infection. Causes urogenital and respiratory disease. This genus currently comprises more than 120 obligate parasitic species found in a wide spectrum of hosts, including humans, animals, insects and plants. The primary habitats of human and animal mycoplasmas are mucous membranes of the respiratory and urogenital tracts, eyes, mammary glands and the joints. Infection that proceeds through attachment of the bacteria to the host cell via specialized surface proteins, adhesins, and subsequent invasion, results in prolonged intracellular persistence that may cause lethality. Once detected in association with their eukaryotic host tissue, most mycoplasmas can be cultivated in the absence of a host if their extremely fastidious growth requirements are met. The latter is one of the major traits that puts them in the separate taxonomic group of microorganisms, class Mollicutes. The cell membrane is rich in protein components (up to two thirds of the membrane mass) that largely consists of highly structurally adaptive lipoproteins employed in invading the host immune system, attachment to the host cells, and pathogenic invasion. Cell division proceeds via normal binary fission or via elongation of a parental cell to form multinucleated filaments and the subsequent breakup to form coccoid bodies.Mycoplasmas carry the smallest genomes of self-replicating cells (less than 500 recognizable coding regions), which is one of the reasons they were among the first microorganisms selected for the genome-sequencing projects. During their evolution, mycoplasmas appear to have lost all of the genes involved in amino acid and cofactor biosynthesis, synthesis of the cell wall and lipid metabolism, resulting in a requirement for the full spectrum of substrates and cofactors taken up from the host or from the complex artificial culture medium. They have lost a number of genes involved in cellular processes, such as cell division, heat shock response, regulatory genes, the two-component signal transduction systems, histidine protein kinases or their target response regulators, and most transcription factors. The majority of mycoplasmas are deficient in genes coding for components of intermediary and energy metabolism and thus are dependent mostly on glycolysis as an ATP-generating pathway. This organism infects humans in the urogenital and respiratory tracts though invasion of tissues. The disease is mainly associated with HIV-1 infection, particularly in the homosexual population, and is very persistent and believed to contribute to the deterioration of the immune system during HIV. Mycoplasma penetrans infection has also been suggested to be a primary cause of some forms of human urethritis and respiratory disease in non-HIV individuals.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_002162:268049*26804929736629318Ureaplasma parvum serovar 3 str. ATCC 700970, complete genome3e-28135BLASTN svgBLASTP svg
NC_014393:4482896*4482896452909946204Clostridium cellulovorans 743B chromosome, complete genome7e-20107BLASTN svgBLASTP svg
NC_000908:160072*16007221039050319Mycoplasma genitalium G37, complete genome3e-19105BLASTN svgBLASTP svg
NC_004829:64000*640008360419605Mycoplasma gallisepticum R, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_008262:654000*65400067859924600Clostridium perfringens SM101, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_005364:817786*81778684063422849Mycoplasma mycoides subsp. mycoides SC str. PG1, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_014209:1910109*1910109194573835630Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,2e-1179.8BLASTN svgBLASTP svg
NC_015978:412856*41285644063427779Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete2e-1179.8BLASTN svgBLASTP svg
NC_003366:72885972885975493526077Clostridium perfringens str. 13, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_004557:26070732607073263038423312Clostridium tetani E88, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_014448:487381*48738151116023780Mycoplasma hyorhinis HUB-1 chromosome, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_014964:388458*38845844542856971Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, complete6e-1177.8BLASTN svgBLASTP svg
NC_013921:1977444*1977444203224454801Thermoanaerobacter italicus Ab9 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007633:790881*79088182774836868Mycoplasma capricolum subsp. capricolum ATCC 27343, complete2e-1075.8BLASTN svgBLASTP svg
NC_002163:1607360*1607360163467927320Campylobacter jejuni subsp. jejuni NCTC 11168, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_003454:128000*12800015096822969Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete1e-0973.8BLASTN svgBLASTP svg
NC_003912:1742370*1742370177273330364Campylobacter jejuni RM1221, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_009662:222964*22296426489641933Nitratiruptor sp. SB155-2, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_012806:105133*10513314579440662Mycoplasma conjunctivae, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_013192:232778*23277828299350216Leptotrichia buccalis DSM 1135, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_014109:393500*39350043671343214Candidatus Riesia pediculicola USDA chromosome, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_014166:1077121*1077121110271725597Arcobacter nitrofigilis DSM 7299 chromosome, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_006055:140686*14068617078530100Mesoplasma florum L1, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_015155:347231*34723136717019940Mycoplasma suis str. Illinois chromosome, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_014614:2295131*2295131232283227702Clostridium sticklandii, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_008261:676000*67600070224526246Clostridium perfringens ATCC 13124, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_009089:87581*8758110818120601Clostridium difficile 630, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_013316:81969*8196911125629288Clostridium difficile R20291, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_014751:772912*77291280869035779Mycoplasma leachii PG50 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_018643:673195*67319570659933405Alpha proteobacterium HIMB5 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_018664:2357882*2357882238773229851Clostridium acidurici 9a chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_006908:291539*29153931741025872Mycoplasma mobile 163K, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_007716:225535*22553524812122587Aster yellows witches'-broom phytoplasma AYWB, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_008817:228029*22802925236024332Prochlorococcus marinus str. MIT 9515, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_007168:813957*81395783855024594Staphylococcus haemolyticus JCSC1435, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007350:692041*69204171972727687Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305,2e-0765.9BLASTN svgBLASTP svg
NC_007929:1397989*1397989142649328505Lactobacillus salivarius subsp. salivarius UCC118, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008787:1582110*1582110160769325584Campylobacter jejuni subsp. jejuni 81-176, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009850:757418*75741877908521668Arcobacter butzleri RM4018, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_011025:361533*36153338025018718Mycoplasma arthritidis 158L3-1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014802:1631483*1631483165971028228Campylobacter jejuni subsp. jejuni ICDCCJ07001 chromosome, complete2e-0765.9BLASTN svgBLASTP svg
NC_020291:166500*16650019679930300Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome2e-0765.9BLASTN svgBLASTP svg
NC_021182:4557608*4557608459730239695Clostridium pasteurianum BC1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009922:542500*54250057462332124Alkaliphilus oremlandii OhILAs, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_010516:3759136*3759136379956240427Clostridium botulinum B1 str. Okra, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_010520:3788702*3788702382916340462Clostridium botulinum A3 str. Loch Maree, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_011134:51218*512187644125224Streptococcus equi subsp. zooepidemicus str. MGCS10565, complete9e-0763.9BLASTN svgBLASTP svg
NC_012471:51305*513057507523771Streptococcus equi subsp. equi 4047, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_012563:3956500*3956500399649139992Clostridium botulinum A2 str. Kyoto, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_013171:1677543*1677543171632938787Anaerococcus prevotii DSM 20548, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_015977:3127500*3127500314861521116Roseburia hominis A2-183 chromosome, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_013454:229587*22958725413424548Blattabacterium sp. (Blattella germanica) str. Bge, complete4e-0661.9BLASTN svgBLASTP svg
NC_012121:1728913*1728913174659917687Staphylococcus carnosus subsp. carnosus TM300, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_012034:1783912*1783912182367039759Anaerocellum thermophilum DSM 6725, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_006055:769418*76941879599926582Mesoplasma florum L1, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_005061:96536*9653614201245477Candidatus Blochmannia floridanus, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_004461:1849176*1849176187898629811Staphylococcus epidermidis ATCC 12228, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_014392:969498*969498100915039653Caldicellulosiruptor obsidiansis OB47 chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_014652:1032711*1032711107395141241Caldicellulosiruptor hydrothermalis 108 chromosome, complete4e-0661.9BLASTN svgBLASTP svg
NC_014657:1540500*1540500155862118122Caldicellulosiruptor owensensis OL chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_014720:1140765*1140765116059919835Caldicellulosiruptor kronotskyensis 2002 chromosome, complete4e-0661.9BLASTN svgBLASTP svg
NC_014721:1777644*1777644181600538362Caldicellulosiruptor kristjanssonii 177R1B chromosome, complete4e-0661.9BLASTN svgBLASTP svg
NC_014925:1970500*1970500198985319354Staphylococcus pseudintermedius HKU10-03 chromosome, complete4e-0661.9BLASTN svgBLASTP svg
NC_015949:1180755*1180755121693036176Caldicellulosiruptor lactoaceticus 6A chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_018645:4049831*4049831407385324023Desulfobacula toluolica Tol2, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_020995:245671*24567126941823748Enterococcus casseliflavus EC20, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_002976:1844901*1844901187401629116Staphylococcus epidermidis RP62A, complete genome4e-0661.9BLASTN svgBLASTP svg