Pre_GI: BLASTP Hits

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Query: NC_017328:1075535:1075535 Shigella flexneri 2002017 chromosome, complete genome

Start: 1075535, End: 1076662, Length: 1128

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004337:1065609:1065609106560910667361128Shigella flexneri 2a str. 301, complete genomehypothetical protein0731
NC_010468:2809125:2826361282636128274881128Escherichia coli ATCC 8739, complete genomehypothetical protein0731
NC_013364:1257801:1258689125868912598161128Escherichia coli O111:H- str. 11128, complete genomehypothetical protein0728
NC_013361:1284579:1285467128546712865941128Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein0728
NC_011601:1114104:1114992111499211161191128Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein0723
NC_015663:3466471:3469282346928234704091128Enterobacter aerogenes KCTC 2190 chromosome, complete genomeinactive ferrous ion transporter periplasmic protein EfeO0658
NC_013716:1178383:1181023118102311821501128Citrobacter rodentium ICC168, complete genomehypothetical protein0652
NC_010465:2582080:2599370259937026005001131Yersinia pseudotuberculosis YPIII, complete genomehypothetical protein1e-159562
NC_005810:1663672:1686269168626916874231155Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein9e-159560
NC_004088:2691565:2713796271379627149501155Yersinia pestis KIM, complete genomehypothetical protein9e-159560
NC_010159:2128157:2129044212904421301741131Yersinia pestis Angola, complete genomehypothetical protein1e-158559
NC_008150:1384102:1384980138498013861101131Yersinia pestis Antiqua, complete genomehypothetical protein1e-158559
NC_003143:2101902:2101902210190221030321131Yersinia pestis CO92, complete genomehypothetical protein1e-158559
NC_009381:1414985:1433153143315314342831131Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein1e-158559
NC_014029:2388500:2407032240703224081621131Yersinia pestis Z176003 chromosome, complete genomehypothetical protein1e-158559
NC_017154:2100587:2101444210144421025741131Yersinia pestis D106004 chromosome, complete genomehypothetical protein1e-158559
NC_017160:2414000:2436038243603824371681131Yersinia pestis D182038 chromosome, complete genomehypothetical protein1e-158559
NC_017168:3535786:3557981355798135591111131Yersinia pestis A1122 chromosome, complete genomeinactive ferrous ion transporter periplasmic protein EfeO1e-158559
NC_020211:3151458:3167111316711131682471137Serratia marcescens WW4, complete genomeinactive ferrous ion transporter EfeUOB4e-158557
NC_013592:1465015:1467741146774114688621122Dickeya dadantii Ech586, complete genomePeptidase M75, Imelysin7e-156550
NC_012660:3179980:317998031799803180798819Pseudomonas fluorescens SBW25 chromosome, complete genomeputative lipoprotein9e-79294
NC_012660:3179980:3182145318214531833471203Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein1e-71270
NC_014168:471000:4930974930974942511155Segniliparus rotundus DSM 44985 chromosome, complete genomepeptidase M752e-51203
NC_013131:4422000:4423881442388144251131233Catenulispora acidiphila DSM 44928, complete genomehypothetical protein1e-50201
NC_013715:1606396:1607903160790316091291227Rothia mucilaginosa DY-18, complete genomepredicted periplasmic lipoprotein involved in iron transport5e-47188
NC_013192:1886337:190410119041011904982882Leptotrichia buccalis DSM 1135, complete genomeperiplasmic iron transport lipoprotein, putative1e-46187
NC_012704:2347969:2371349237134923726891341Corynebacterium kroppenstedtii DSM 44385, complete genomeputative lipoprotein involved in iron transport3e-40166
NC_015656:2900730:2900730290073029028712142Frankia symbiont of Datisca glomerata chromosome, complete genomeiron permease FTR16e-2099
NC_007777:4016000:4035140403514040372482109Frankia sp. CcI3, complete genomeiron permease FTR11e-1791.3