Pre_GI: BLASTP Hits

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Query: NC_016822:15401:21962 Shigella sonnei 53G, complete genome

Start: 21962, End: 22921, Length: 960

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011741:11381:183091830919268960Escherichia coli IAI1 chromosome, complete genomehypothetical protein4e-179627
CU928160:11381:183091830919268960Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein; putative exported protein; putative bacterial adhesin4e-179627
CU928145:11394:183221832219281960Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein; putative exported protein; putative bacterial adhesin3e-178624
NC_011748:11394:183221832219281960Escherichia coli 55989, complete genomehypothetical protein3e-178624
NC_009801:11921:195881958820547960Escherichia coli E24377A, complete genomehypothetical protein3e-178624
CP002516:4081484:409135540913554092314960Escherichia coli KO11, complete genomehypothetical protein5e-177620
NC_016902:4081484:409135540913554092314960Escherichia coli KO11FL chromosome, complete genomehypothetical protein5e-177620
NC_013941:12000:183081830819267960Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein5e-177620
NC_012947:3753375:376310537631053764064960Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein3e-177620
NC_012967:12161:196581965820617960Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein3e-177620
NC_011750:12047:221192211923078960Escherichia coli IAI39 chromosome, complete genomehypothetical protein5e-176616
NC_011751:12000:182661826619225960Escherichia coli UMN026 chromosome, complete genomehypothetical protein1e-175615
NC_009800:12162:196581965820437780Escherichia coli HS, complete genomehypothetical protein1e-141502
NC_007384:16500:227412274123424684Shigella sonnei Ss046, complete genomehypothetical protein4e-118424
NC_010468:3970995:398202039820203982643624Escherichia coli ATCC 8739, complete genomehypothetical protein4e-109394
CP002185:11921:195881958820211624Escherichia coli W, complete genomeconserved hypothetical protein4e-109394
NC_002655:12000:183261832618949624Escherichia coli O157:H7 EDL933, complete genomehypothetical protein2e-108392
NC_013364:11382:182941829418821528Escherichia coli O111:H- str. 11128, complete genome3e-90332
NC_013361:11382:183101831018837528Escherichia coli O26:H11 str. 11368 chromosome, complete genome3e-90332
NC_013353:12660:195881958820115528Escherichia coli O103:H2 str. 12009, complete genome3e-90332
AP010958:12660:195881958820115528Escherichia coli O103:H2 str. 12009 DNA, complete genome3e-90332
NC_011353:12000:183261832618853528Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein9e-90330
NC_002695:12000:183261832618853528Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein8e-89327
NC_011415:11381:183091830918734426Escherichia coli SE11 chromosome, complete genomehypothetical protein7e-79294
NC_013361:11382:189441894419269326Escherichia coli O26:H11 str. 11368 chromosome, complete genome2e-57223
NC_013364:11382:189281892819253326Escherichia coli O111:H- str. 11128, complete genome2e-57223
NC_002655:12000:189601896019286327Escherichia coli O157:H7 EDL933, complete genomehypothetical protein2e-52206
NC_002695:12000:189591895919285327Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-52206
NC_010468:3970995:398167739816773981925249Escherichia coli ATCC 8739, complete genomehypothetical protein1e-41170
NC_011353:12000:189601896019169210Escherichia coli O157:H7 str. EC4115 chromosome, complete genome7e-29128
NC_011283:819970:833286833286834014729Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein1e-21104
NC_013353:12660:203282032820546219Escherichia coli O103:H2 str. 12009, complete genome3e-21102
AP010958:12660:203282032820546219Escherichia coli O103:H2 str. 12009 DNA, complete genome3e-21102