Pre_GI Gene

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Host: NC_009800 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009800:12162 Escherichia coli HS, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
12162140781917chaperone protein DnaKQuickGO ontologyBLASTP
14167152971131chaperone protein DnaJQuickGO ontologyBLASTP
15560166721113IS186 transposaseQuickGO ontologyBLASTP
1675016959210putative Hokgef family proteinQuickGO ontologyBLASTP
17488186541167NaH antiporter NhaAQuickGO ontologyBLASTP
1872019619900transcriptional activator protein NhaRQuickGO ontologyBLASTP
1965820437780hypothetical proteinBLASTP
2220722770564hypothetical proteinBLASTP
2281223627816hypothetical proteinBLASTP
2411124374264ribosomal protein S20QuickGO ontologyBLASTP
2447724695219hypothetical proteinBLASTP
2470325644942riboflavin biosynthesis protein RibFQuickGO ontologyBLASTP
25687285032817isoleucyl-tRNA synthetaseQuickGO ontologyBLASTP
2850328997495signal peptidase IIQuickGO ontologyBLASTP
2908529534450FKBP-type 16 kDa peptidyl-prolyl cis-trans isomeraseQuickGO ontologyBLASTP
29536304869514-hydroxy-3-methylbut-2-enyl diphosphate reductaseQuickGO ontologyBLASTP
3055231466915nonspecific ribonucleoside hydrolase RihCQuickGO ontologyBLASTP
3163332454822dihydrodipicolinate reductaseQuickGO ontologyBLASTP
3249632663168hypothetical proteinBLASTP
32910340581149carbamoyl-phosphate synthase small subunitQuickGO ontologyBLASTP
34076372973222carbamoyl-phosphate synthase large subunitQuickGO ontologyBLASTP