Pre_GI: BLASTP Hits

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Query: NC_012917:1840172:1840172 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 1840172, End: 1841059, Length: 888

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013421:3117639:313558331355833136464882Pectobacterium wasabiae WPP163, complete genomeprotein of unknown function DUF6 transmembrane6e-136483
NC_010159:1818500:183158318315831832464882Yersinia pestis Angola, complete genomeintegral membrane protein2e-102372
NC_017154:2804000:281701828170182817899882Yersinia pestis D106004 chromosome, complete genomeintegral membrane protein2e-102372
NC_017265:1571305:157482515748251575712888Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,threonine and homoserine efflux system2e-102372
NC_003143:2804500:281753928175392818426888Yersinia pestis CO92, complete genomehypothetical protein2e-102372
NC_004088:1851500:185374418537441854631888Yersinia pestis KIM, complete genometransmembrane subunit2e-102372
NC_010634:2894631:292871929287192929606888Yersinia pseudotuberculosis PB1/+, complete genomehypothetical protein2e-102372
NC_006155:2979500:301077730107773011664888Yersinia pseudotuberculosis IP 32953, complete genomeputative DMT superfamily metabolite efflux protein2e-102372
NC_008149:2366500:237932323793232380210888Yersinia pestis Nepal516, complete genomemembrane protein2e-102372
NC_017168:2941938:294401029440102944897888Yersinia pestis A1122 chromosome, complete genomethreonine and homoserine efflux system2e-102372
NC_017160:2787637:279115627911562792043888Yersinia pestis D182038 chromosome, complete genomehypothetical protein2e-102372
NC_014029:2756500:276986227698622770749888Yersinia pestis Z176003 chromosome, complete genomehypothetical protein2e-102372
NC_009708:1735903:174142617414261742313888Yersinia pseudotuberculosis IP 31758 chromosome, complete genomethreonine and homoserine efflux system2e-102372
NC_009381:2138625:216974721697472170634888Yersinia pestis Pestoides F chromosome, complete genomethreonine and homoserine efflux system2e-102372
NC_005810:2549680:258359325835932584480888Yersinia pestis biovar Microtus str. 91001, complete genomethreonine and homoserine efflux system2e-102372
NC_013364:928486:929288929288930175888Escherichia coli O111:H- str. 11128, complete genomethreonine and homoserine efflux system protein RhtA8e-94343
NC_013353:922937:923739923739924626888Escherichia coli O103:H2 str. 12009, complete genomethreonine and homoserine efflux system protein RhtA8e-94343
AP010958:922937:923739923739924626888Escherichia coli O103:H2 str. 12009 DNA, complete genomethreonine and homoserine efflux system protein RhtA8e-94343
NC_015061:1481500:149917414991741500160987Rahnella sp. Y9602 chromosome, complete genomehypothetical protein1e-72273
NC_017047:1434500:145211714521171453103987Rahnella aquatilis HX2 chromosome, complete genomethreonine and homoserine efflux system1e-72273
NC_014013:112008:115305115305116192888Sphingobium japonicum UT26S chromosome 2, complete genomeEamA family transporter2e-59229
NC_011892:306437:314029314029314946918Methylobacterium nodulans ORS 2060 plasmid pMNOD01, completeprotein of unknown function DUF6 transmembrane6e-51201
NC_015563:4414854:443042444304244431326903Delftia sp. Cs1-4 chromosome, complete genomehypothetical protein1e-49197
NC_014830:1871135:189721918972191898109891Intrasporangium calvum DSM 43043 chromosome, complete genomeprotein of unknown function DUF6 transmembrane1e-28126
NC_014215:1243125:125724512572451258120876Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,Permeases of the drug/metabolite transporter (DMT) superfamily7e-28124
NC_015957:5310000:532314353231435323991849Streptomyces violaceusniger Tu 4113 chromosome, complete genomehypothetical protein1e-26120
NC_010572:188500:207370207370208281912Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative integral membrane protein8e-23107
NC_009142:4046376:4050099405009940511361038Saccharopolyspora erythraea NRRL 2338, complete genometransporter, EamA family7e-22104
NC_015381:1318818:133929313392931340189897Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein3e-2099.4
NC_009480:703102:720800720800721792993Clavibacter michiganensis subsp. michiganensis NCPPB 382, completeputative permease, DMT family1e-1997.4
NC_009953:2727669:275155027515502752416867Salinispora arenicola CNS-205 chromosome, complete genomehypothetical protein2e-1686.7
NC_007802:1991211:201389220138922014761870Jannaschia sp. CCS1, complete genomehypothetical protein5e-1582
NC_007802:1484641:149018414901841491113930Jannaschia sp. CCS1, complete genomehypothetical protein6e-1581.6
NC_009380:2548878:2569223256922325702331011Salinispora tropica CNB-440 chromosome, complete genomehypothetical protein4e-1272
NC_014218:253558:254783254783255646864Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomeprotein of unknown function DUF6 transmembrane8e-1167.8
NC_013947:1956923:196428119642811965153873Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehypothetical protein1e-0963.9