Pre_GI: BLASTP Hits

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Query: NC_011959:1965158:1975415 Thermomicrobium roseum DSM 5159, complete genome

Start: 1975415, End: 1976677, Length: 1263

Host Lineage: Thermomicrobium roseum; Thermomicrobium; Thermomicrobiaceae; Thermomicrobiales; Chloroflexi; Bacteria

General Information: Thermomicrobium roseum DSM 5159 was isolated from Yellowstone National Park, USA. Obligate thermophile with unusual cell wall structure. Thermomicrobium roseum is a red-pigmented, rod-shaped, Gram-negative extreme thermophile that possesses both an atypical cell wall composition and an unusual cell membrane that is composed entirely of long-chain 1,2-diols. Analyses of environmental sequences from hot spring environments show that T.roseum displays a low quantity but ubiquitous presence in top layers of microbial mats. Few standard housekeeping genes are found on the megaplasmid, however, it does encode a complete system for chemotaxis including both chemosensory components and an entire flagellar apparatus. T. roseum oxidizes CO aerobically, making it the first thermophile known to do so. In addition, is is propose that glycosylation of its carotenoids plays a crucial role in the adaptation of the cell membrane to this bacterium's thermophilic lifestyle. Because T. roseum is a deep-branching member of this phylum, eventhough this species is not photosynthetic, analysis of the genome provides some insight into the origins of photosynthesis in the Chloroflexi.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013956:663295:6822426822426834951254Pantoea ananatis LMG 20103 chromosome, complete genomeRspA2e-130465
NC_014306:2518996:2518996251899625202491254Erwinia billingiae Eb661, complete genomeGalactonate dehydratase2e-126452
NC_016612:178864:1816411816411828941254Klebsiella oxytoca KCTC 1686 chromosome, complete genomedehydratase3e-126451
NC_012669:1011473:1016366101636610176671302Beutenbergia cavernae DSM 12333, complete genomeMandelate racemase/muconate lactonizing protein1e-104380
NC_013517:1038000:1039918103991810411171200Sebaldella termitidis ATCC 33386, complete genomeMandelate racemase/muconate lactonizing protein1e-100367
NC_009800:1657550:1676062167606216772761215Escherichia coli HS, complete genomestarvation-sensing protein RspA4e-86318
NC_010995:3640913:3645577364557736467851209Cellvibrio japonicus Ueda107, complete genomeStarvation sensing protein rspA2e-85316
NC_013174:2564979:2576791257679125780201230Jonesia denitrificans DSM 20603, complete genomemandelate racemase/muconate-lactonizing protein3e-85315
NC_008786:3915000:3937759393775939390541296Verminephrobacter eiseniae EF01-2, complete genomeMandelate racemase/muconate lactonizing enzyme, C-terminal domain protein4e-84311
NC_017093:2357583:2375715237571523769681254Actinoplanes missouriensis 431, complete genomeputative mandelate racemase/muconate lactonizing enzyme6e-83308
NC_013037:6281164:6338780633878063399581179Dyadobacter fermentans DSM 18053, complete genomeMandelate racemase/muconate lactonizing protein5e-46185
NC_019978:2532640:2540084254008425412321149Halobacteroides halobius DSM 5150, complete genomeenolase superfamily enzyme related to L-alanine-DL-glutamate epimerase7e-44178
NC_009256:3056000:3075584307558430767321149Burkholderia vietnamiensis G4 chromosome 1, complete sequencegalactonate dehydratase2e-41170
NC_017047:2957957:2959435295943529605831149Rahnella aquatilis HX2 chromosome, complete genomegalactonate dehydratase2e-41170
NC_015061:2927707:2929186292918629303341149Rahnella sp. Y9602 chromosome, complete genomeMandelate racemase/muconate lactonizing protein4e-41169
NC_014550:3534000:3547607354760735487551149Arthrobacter arilaitensis Re117, complete genomegalactonate dehydratase8e-39161
NC_008010:200796:2158792158792170271149Deinococcus geothermalis DSM 11300 plasmid 1, complete sequenceMandelate racemase/muconate lactonizing enzyme-like4e-38159
NC_016745:1472000:1477793147779314789741182Oceanimonas sp. GK1 chromosome, complete genomemandelate racemase/muconate lactonizing protein4e-38159
NC_019974:1184871:1230980123098012321311152Natronococcus occultus SP4, complete genomeenolase superfamily enzyme related to L-alanine-DL-glutamate epimerase6e-38158
NC_006510:1995916:1999092199909220002401149Geobacillus kaustophilus HTA426, complete genomegalactonate dehydratase2e-36153
NC_012850:3454270:3455189345518934563341146Rhizobium leguminosarum bv. trifolii WSM1325, complete genomeMandelate racemase/muconate lactonizing protein6e-36152
NC_014363:8228:1919219192203371146Olsenella uli DSM 7084 chromosome, complete genomeMandelate racemase/muconate lactonizing protein5e-35149
NC_010498:1094000:1110613111061311117611149Escherichia coli SMS-3-5, complete genomemandelate racemase/muconate lactonizing enzyme family protein1e-34147
NC_007948:4558000:4596945459694545981051161Polaromonas sp. JS666, complete genomemandelate racemase/muconate lactonizing enzyme3e-33143
NC_007948:4646344:4658443465844346595701128Polaromonas sp. JS666, complete genomemandelate racemase/muconate lactonizing enzyme2e-33143
NC_005877:509877:5132215132215143961176Picrophilus torridus DSM 9790, complete genomegluconate/galactonate dehydratase2e-32140
NC_003888:3817000:3835870383587038370031134Streptomyces coelicolor A3(2), complete genomeisomerase2e-32140
NC_011959:1965158:1974154197415419753261173Thermomicrobium roseum DSM 5159, complete genome2-oxo-3-deoxygalactonate 6-phosphate aldolase and galactonate dehydratase4e-32139
NC_014298:310964:3400563400563413211266Halalkalicoccus jeotgali B3 plasmid 1, complete sequenceMandelate racemase/muconate lactonizing protein5e-31135
NC_008380:4078670:4081119408111940822851167Rhizobium leguminosarum bv. viciae 3841, complete genomeputative mandelate racemase/muconate lactonising family protein2e-30133
NC_007963:3553678:3562167356216735633391173Chromohalobacter salexigens DSM 3043, complete genomemandelate racemase/muconate lactonizing enzyme6e-28125
NC_014297:476510:5207865207865220061221Halalkalicoccus jeotgali B3 chromosome, complete genomeMandelate racemase/muconate lactonizing protein4e-28125
NC_008541:2119883:2139544213954421407311188Arthrobacter sp. FB24 chromosome 1, complete sequenceMandelate racemase/muconate lactonizing enzyme, N-terminal domain protein1e-26121
NC_013730:7355010:7368559736855973699831425Spirosoma linguale DSM 74, complete genomeGalactonate dehydratase3e-26119
NC_011959:1965158:1977016197701619782151200Thermomicrobium roseum DSM 5159, complete genomeprobable galactonate dehydratase protein1e-25118
NC_003888:3817000:3843523384352338446081086Streptomyces coelicolor A3(2), complete genomeracemase8e-26118
NC_012589:2303096:2317250231725023185091260Sulfolobus islandicus L.S.2.15, complete genomeMandelate racemase/muconate lactonizing protein8e-26118
NC_012588:2173907:2188053218805321893121260Sulfolobus islandicus M.14.25 chromosome, complete genomemandelate racemase/muconate lactonizing protein7e-26118
NC_012623:355393:3614623614623627211260Sulfolobus islandicus Y.N.15.51 chromosome, complete genomemandelate racemase/muconate lactonizing protein7e-26118
NC_012726:2179085:2190726219072621919851260Sulfolobus islandicus M.16.4 chromosome, complete genomemandelate racemase/muconate lactonizing protein7e-26118
NC_017276:2080102:2096193209619320974521260Sulfolobus islandicus REY15A chromosome, complete genomemandelate racemase (MR) subfamily7e-26118
NC_006396:508802:5107795107795120291251Haloarcula marismortui ATCC 43049 chromosome I, complete sequencemandelate racemase/muconate lactonizing enzyme family1e-25117
NC_011887:72364:8731387313885031191Methylobacterium nodulans ORS 2060 plasmid pMNOD02, completeMandelate racemase/muconate lactonizing protein1e-25117
NC_014364:815346:8539138539138551031191Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeMandelate racemase/muconate lactonizing protein1e-25117
NC_007181:1766910:1776768177676817778861119Sulfolobus acidocaldarius DSM 639, complete genomemandelate racemase/muconate lactonizing enzyme1e-25117
NC_002689:1228061:1250055125005512512211167Thermoplasma volcanium GSS1, complete genomeGalactonate dehydratase3e-25116
NC_012632:2279544:2293690229369022949491260Sulfolobus islandicus M.16.27 chromosome, complete genomemandelate racemase/muconate lactonizing protein6e-25115
NC_019974:2421422:2444798244479824460361239Natronococcus occultus SP4, complete genomeenolase superfamily enzyme related to L-alanine-DL-glutamate epimerase6e-24112
NC_003911:2540453:2565441256544125666101170Silicibacter pomeroyi DSS-3, complete genomemandelate racemase/muconate lactonizing enzyme family protein3e-23109
NC_010676:2720068:2731170273117027323031134Burkholderia phytofirmans PsJN chromosome 2, complete sequenceMandelate racemase/muconate lactonizing protein3e-23109
NC_003305:1297785:1319671131967113208581188Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein7e-23108
NC_014541:643604:6616346616346627551122Ferrimonas balearica DSM 9799 chromosome, complete genomeMandelate racemase/muconate lactonizing protein4e-22106
NC_014500:564864:5660205660205673661347Dickeya dadantii 3937 chromosome, complete genomemandelate racemase/muconate lactonizing enzyme family protein1e-21104
NC_011740:1494796:1510509151050915117171209Escherichia fergusonii ATCC 35469, complete genomeputative mandelate racemase2e-21104
NC_019964:1873167:1890729189072918920331305Halovivax ruber XH-70, complete genomeenolase superfamily enzyme related to L-alanine-DL-glutamate epimerase2e-21103
NC_015151:665346:6873766873766884791104Vulcanisaeta moutnovskia 768-28 chromosome, complete genomemandelate racemase/muconate lactonizing enzyme, C-terminal domain protein6e-21102
NC_014376:693820:7121477121477132501104Clostridium saccharolyticum WM1 chromosome, complete genomeMandelate racemase/muconate lactonizing protein4e-21102
NC_008786:3045770:3053931305393130551271197Verminephrobacter eiseniae EF01-2, complete genomeMandelate racemase/muconate lactonizing enzyme, N-terminal domain protein8e-21101
NC_009664:4696961:4757316475731647584161101Kineococcus radiotolerans SRS30216, complete genomeMandelate racemase/muconate lactonizing protein1e-20101
NC_015556:4118304:4141558414155841427121155Pseudomonas fulva 12-X chromosome, complete genomeMandelate racemase/muconate lactonizing protein2e-1997.4
NC_013740:2218215:2231462223146222326251164Acidaminococcus fermentans DSM 20731, complete genomeMandelate racemase/muconate lactonizing protein5e-1995.9
NC_007963:2777066:2782685278268527838211137Chromohalobacter salexigens DSM 3043, complete genomemandelate racemase/muconate lactonizing enzyme2e-1894
NC_014315:2787089:2814909281490928160121104Nitrosococcus watsoni C-113 chromosome, complete genomemandelate racemase/muconate lactonizing protein8e-1892
NC_015563:313283:3329173329173341041188Delftia sp. Cs1-4 chromosome, complete genomeL-rhamnonate dehydratase1e-1791.7
NC_007484:495784:5048755048755059781104Nitrosococcus oceani ATCC 19707, complete genomeMandelate racemase/muconate lactonizing enzyme1e-1790.9
NC_014614:260782:2744012744012755041104Clostridium sticklandii, complete genomeputative muconate cycloisomerase2e-1790.9
NC_003911:3864852:3869173386917338703031131Silicibacter pomeroyi DSS-3, complete genomemuconate cycloisomerase I2e-1790.5
NC_015968:3053565:3058766305876630599201155Enterobacter asburiae LF7a chromosome, complete genomeMandelate racemase/muconate lactonizing protein3e-1789.7
NC_017068:1327025:1330760133076013318511092Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative chloromuconate cycloisomerase4e-1789.7
NC_011894:6708970:6722559672255967237431185Methylobacterium nodulans ORS 2060, complete genomeMandelate racemase/muconate lactonizing protein4e-1789.7
NC_019974:1184871:1201337120133712024221086Natronococcus occultus SP4, complete genomeenolase superfamily enzyme related to L-alanine-DL-glutamate epimerase9e-1788.6
NC_014839:12519:172471724718019773Pantoea sp. At-9b plasmid pPAT9B02, complete sequence1e-1688.2
NC_007348:752692:7614247614247626141191Ralstonia eutropha JMP134 chromosome 2, complete sequenceMandelate racemase/muconate lactonizing enzyme2e-1687.8
NC_009440:1045882:1054839105483910559811143Metallosphaera sedula DSM 5348 chromosome, complete genomemandelate racemase/muconate lactonizing protein2e-1687.4
NC_012673:77610:9578795787969171131Exiguobacterium sp. AT1b, complete genomeMandelate racemase/muconate lactonizing protein3e-1686.3
NC_008786:2573558:2577007257700725781161110Verminephrobacter eiseniae EF01-2, complete genomeMandelate racemase/muconate lactonizing enzyme, C-terminal domain protein5e-1685.9
NC_015711:7265439:7270641727064172717591119Myxococcus fulvus HW-1 chromosome, complete genomemandelate racemase/muconate lactonizing enzyme family protein5e-1685.9
NC_008380:4078670:4083728408372840849271200Rhizobium leguminosarum bv. viciae 3841, complete genomeputative madelate racemase/muconate lactonising family protein6e-1685.9
NC_008380:4078670:4082349408234940837101362Rhizobium leguminosarum bv. viciae 3841, complete genomeputative mandelate racemase/muconate lactonising family protein8e-1685.1
NC_018000:1914945:1956256195625619573711116Sinorhizobium fredii USDA 257 chromosome, complete genomeL-alanine-DL-glutamate epimerase-like protein2e-1584
NC_002678:6061448:6083376608337660845601185Mesorhizobium loti MAFF303099, complete genomechloromuconate cycloisomerase3e-1480.1
NC_015136:2282488:2321268232126823224281161Burkholderia sp. CCGE1001 chromosome 1, complete sequencemandelate racemase/muconate lactonizing protein3e-1480.1
NC_004193:2921103:2926661292666129278361176Oceanobacillus iheyensis HTE831, complete genomemuconate cycloisomerase5e-1479.3
NC_007952:3196085:3229683322968332307621080Burkholderia xenovorans LB400 chromosome 2, complete sequencePutative mandelate racemase (MdlA)6e-1479
NC_012632:538967:5428355428355439531119Sulfolobus islandicus M.16.27 chromosome, complete genomemandelate racemase/muconate lactonizing protein7e-1478.6
NC_012623:2004786:2009055200905520101731119Sulfolobus islandicus Y.N.15.51 chromosome, complete genomemandelate racemase/muconate lactonizing protein8e-1478.6
NC_012588:742000:7617737617737628851113Sulfolobus islandicus M.14.25 chromosome, complete genomemandelate racemase/muconate lactonizing protein8e-1478.6
NC_015873:238187:2559092559092570031095Megasphaera elsdenii DSM 20460, complete genomemandelate racemase/muconate lactonizing enzyme1e-1378.2
NC_016642:1990684:2010756201075620119251170Pseudovibrio sp. FO-BEG1 chromosome, complete genomemandelate racemase/muconate lactonizing protein2e-1377.4
NC_008319:787881:7904647904647914891026Synechococcus sp. CC9311, complete genomeMandelate racemase / muconate lactonizing enzyme, N-terminal domain protein3e-1376.6
NC_010508:2776283:2793244279324427944101167Burkholderia cenocepacia MC0-3 chromosome 1, complete sequenceMandelate racemase/muconate lactonizing protein8e-1375.1
NC_014118:1592000:1610405161040516115771173Burkholderia sp. CCGE1002 chromosome chromosome 2, completeMandelate racemase/muconate lactonizing protein1e-1274.7
NC_012880:3748665:3786817378681737879291113Dickeya dadantii Ech703, complete genomeMandelate racemase/muconate lactonizing protein1e-1274.3
NC_015635:811500:8341248341248354251302Microlunatus phosphovorus NM-1, complete genomedehydratase2e-1273.9
NC_007951:3631772:3651060365106036521721113Burkholderia xenovorans LB400 chromosome 1, complete sequenceChloromuconate cycloisomerase2e-1273.9
NC_010170:1580832:1582665158266515837771113Bordetella petrii, complete genomemuconate cycloisomerase I2e-1273.9
NC_017082:6444522:6446279644627964473701092Bradyrhizobium sp. S23321, complete genomemandelate racemase3e-1273.2
NC_007337:10464:2166921669227811113Ralstonia eutropha JMP134 plasmid 1, complete sequenceMandelate racemase/muconate lactonizing enzyme4e-1273.2
NC_011002:564654:5676085676085687441137Burkholderia cenocepacia J2315 chromosome 3, complete sequencemuconate cycloisomerase I 24e-1273.2
NC_002578:1434396:1441606144160614427001095Thermoplasma acidophilum DSM 1728, complete genomemandelate racemase related protein2e-1170.9
NC_017275:927814:9468219468219479511131Sulfolobus islandicus HVE10/4 chromosome, complete genomemandelate racemase/muconate lactonizing family protein2e-1170.5
NC_007948:4646344:4647276464727646484571182Polaromonas sp. JS666, complete genomemandelate racemase/muconate lactonizing enzyme3e-1169.7
NC_007948:517893:5355515355515366451095Polaromonas sp. JS666, complete genomemandelate racemase/muconate lactonizing enzyme7e-1168.9
NC_014311:1545175:1552091155209115532571167Ralstonia solanacearum PSI07 chromosome, complete genomemandelate racemase6e-1168.9
NC_015312:3290887:3303947330394733050681122Pseudonocardia dioxanivorans CB1190 chromosome, complete genomemuconate and chloromuconate cycloisomerase1e-1068.6
NC_018643:807405:8227418227418238441104Alpha proteobacterium HIMB5 chromosome, complete genomemandelate racemase family protein,mandelate racemase family protein1e-1068.2
NC_011740:1494796:1516005151600515172071203Escherichia fergusonii ATCC 35469, complete genomeMuconate cycloisomerase I (Cis,cis-muconate lactonizing enzyme I) (MLE)2e-1067.4
NC_013198:394000:4344884344884356211134Lactobacillus rhamnosus GG, complete genomeenolase superfamily protein, N-acylamino acid racemase, mandelate racemase/muconate lactonizing enzyme / o-succinylbenzoate synthase5e-1065.9
NC_010170:3944228:3958433395843339595451113Bordetella petrii, complete genomeChloromuconate cycloisomerase1e-0964.7
NC_002947:4167500:4237124423712442382451122Pseudomonas putida KT2440, complete genomemuconate cycloisomerase1e-0964.7
NC_014641:20103:2290822908240201113Achromobacter xylosoxidans A8 plasmid pA81, complete sequencechloromuconate cycloisomerase1e-0964.7
NC_019791:570923:5709235709235720561134Caldisphaera lagunensis DSM 15908 chromosome, complete genomeo-succinylbenzoic acid synthetase1e-0964.3
NC_016023:1658377:1660267166026716613311065Bacillus coagulans 36D1 chromosome, complete genomemandelate racemase/muconate lactonizing protein2e-0963.9
NC_007492:3384077:3399964339996434010851122Pseudomonas fluorescens PfO-1, complete genomeMandelate racemase/muconate lactonizing enzyme4e-0962.8
NC_002678:6061448:6084562608456260856651104Mesorhizobium loti MAFF303099, complete genomemuconate lactonizing enzyme7e-0962
NC_016943:1314500:1348685134868513499951311Blastococcus saxobsidens DD2, complete genomemandelate racemase9e-0962
NC_015733:2720183:2742169274216927434821314Pseudomonas putida S16 chromosome, complete genomemandelate racemase/muconate lactonizing protein1e-0861.2
NC_017986:5833819:5837087583708758382201134Pseudomonas putida ND6 chromosome, complete genomeCatB1e-0861.2
NC_020209:1949500:1971604197160419727311128Pseudomonas poae RE*1-1-14, complete genomemuconate cycloisomerase 12e-0860.5
NC_013757:1343396:1359369135936913604721104Geodermatophilus obscurus DSM 43160, complete genomeMandelate racemase/muconate lactonizing protein2e-0860.5
NC_012792:385670:3856703856703868361167Variovorax paradoxus S110 chromosome 2, complete genomeMandelate racemase/muconate lactonizing protein2e-0757.8
NC_010552:592154:6173636173636184961134Burkholderia ambifaria MC40-6 chromosome 2, complete sequencemuconate and chloromuconate cycloisomerase2e-0757.4
NC_007492:3180480:3199524319952432006931170Pseudomonas fluorescens PfO-1, complete genomeMandelate racemase/muconate lactonizing enzyme4e-0756.2
NC_010172:480000:5035045035045046671164Methylobacterium extorquens PA1, complete genomeMandelate racemase/muconate lactonizing protein6e-0755.8
NC_015138:1582458:1585367158536715865361170Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completemandelate racemase/muconate lactonizing protein1e-0655.1
NC_008752:1523768:1530593153059315317621170Acidovorax avenae subsp. citrulli AAC00-1, complete genomeMandelate racemase/muconate lactonizing enzyme, C-terminal domain protein2e-0654.3