Pre_GI Gene

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Host: NC_011959 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011959:1965158 Thermomicrobium roseum DSM 5159, complete genome

Host Lineage: Thermomicrobium roseum; Thermomicrobium; Thermomicrobiaceae; Thermomicrobiales; Chloroflexi; Bacteria

General Information: Thermomicrobium roseum DSM 5159 was isolated from Yellowstone National Park, USA. Obligate thermophile with unusual cell wall structure. Thermomicrobium roseum is a red-pigmented, rod-shaped, Gram-negative extreme thermophile that possesses both an atypical cell wall composition and an unusual cell membrane that is composed entirely of long-chain 1,2-diols. Analyses of environmental sequences from hot spring environments show that T.roseum displays a low quantity but ubiquitous presence in top layers of microbial mats. Few standard housekeeping genes are found on the megaplasmid, however, it does encode a complete system for chemotaxis including both chemosensory components and an entire flagellar apparatus. T. roseum oxidizes CO aerobically, making it the first thermophile known to do so. In addition, is is propose that glycosylation of its carotenoids plays a crucial role in the adaptation of the cell membrane to this bacterium's thermophilic lifestyle. Because T. roseum is a deep-branching member of this phylum, eventhough this species is not photosynthetic, analysis of the genome provides some insight into the origins of photosynthesis in the Chloroflexi.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
19651581966039882Senescence marker protein-30 SMP-30QuickGO ontologyBLASTP
19661351966383249hypothetical protein
19663851967101717putative oxidoreductase proteinQuickGO ontologyBLASTP
19672561967393138hypothetical protein
19681611969000840maltose ABC transporter permeaseQuickGO ontologyBLASTP
196901119700151005oligopeptide ABC transporter permease proteinQuickGO ontologyBLASTP
197012119719651845Bacterial extracellular solute-binding proteins family 5QuickGO ontologyBLASTP
197185319731001248putative oligopeptide transport atp-binding abc transporter proteinQuickGO ontologyBLASTP
197309719741401044oligopeptide transport ATP-binding protein appFQuickGO ontologyBLASTP
1974154197532611732-oxo-3-deoxygalactonate 6-phosphate aldolase and galactonate dehydrataseQuickGO ontologyBLASTP
197541519766771263mandelate racemasemuconate lactonizing enzymeMandelate racemasemuconate lactonizing enzymeQuickGO ontologyBLASTP
197701619782151200probable galactonate dehydratase proteinQuickGO ontologyBLASTP
197831519797121398putative lipoproteinQuickGO ontology
197977619808911116ErfKYbiSYcfSYnhG family proteinQuickGO ontologyBLASTP
19812471981612366putative peptidaseQuickGO ontologyBLASTP
19816151981857243hypothetical protein
19818541982735882ComE operon protein 3QuickGO ontologyBLASTP
19827411983322582CDP-diacylglycerol--glycerol-3-phosphate 3 -phosphatidyltransferase pgsAQuickGO ontologyBLASTP
198332919845161188glycosyl transferaseQuickGO ontologyBLASTP
19845501984714165hypothetical protein
19847211985227507PRC-barrel domain proteinQuickGO ontologyBLASTP
198536619878942529putative penicillin-binding protein 1AQuickGO ontologyBLASTP