Pre_GI Gene

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Host: NC_007951 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007951:3631772 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
36317723632398627Putative esteraseQuickGO ontologyBLASTP
3632776363381310384-hydroxy 2-oxovalerate aldolaseQuickGO ontologyBLASTP
36338293634770942Acetaldehyde dehydrogenase acylatingQuickGO ontologyBLASTP
363483136355957654-oxalocrotonate decarboxylaseQuickGO ontologyBLASTP
363559236364018102-oxopent-4-enoate hydrataseQuickGO ontologyBLASTP
363641636368534382-aminomuconate deaminaseQuickGO ontologyBLASTP
3636858363833614792-aminomuconic 6-semialdehyde dehydrogenaseQuickGO ontologyBLASTP
363839636392088132-aminophenol 16-dioxygenase alpha subunitQuickGO ontologyBLASTP
363925336401679152-aminophenol 16-dioxygenase beta subunitQuickGO ontologyBLASTP
36401793640592414Putative endoribonuclease translationalinhibitor proteinQuickGO ontologyBLASTP
36406883641305618Transcriptional regulator MarR familyQuickGO ontologyBLASTP
36414443642196753hypothetical proteinBLASTP
36422183642877660Transcriptional regulator TetR familyQuickGO ontologyBLASTP
36429903643409420hypothetical proteinBLASTP
36436003644499900hypothetical proteinBLASTP
36449303645616687Transcriptional regulator TetR familyQuickGO ontologyBLASTP
36456133646137525Transcriptional regulator MarR familyQuickGO ontology
36461593647070912Transcriptional regulator LysR familyQuickGO ontologyBLASTP
36470963647395300Transcriptional Regulator XRE familyQuickGO ontologyBLASTP
36475173648158642transcriptional regulator LysR familyQuickGO ontologyBLASTP
36492273650111885Transcriptional regulator LysR familyQuickGO ontologyBLASTP
365028136510637833-chlorocatechol 12-dioxygenaseQuickGO ontologyBLASTP
365106036521721113Chloromuconate cycloisomeraseQuickGO ontologyBLASTP
36521993653185987putative tricarboxylate transporter periplasmic ligand binding protein TctC subunitQuickGO ontologyBLASTP
36532073653917711Dienelactone hydrolaseQuickGO ontologyBLASTP
365391436549721059Maleylacetate reductaseQuickGO ontologyBLASTP