Pre_GI: BLASTP Hits

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Query: NC_010501:1868888:1894602 Pseudomonas putida W619, complete genome

Start: 1894602, End: 1895321, Length: 720

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida is a common endophytic and rhizosphere bacterium. Pseudomonas putida W619 was isolated from the Black Cottonwood tree and is closely related to other endophytic and rhizosphere strains of Pseudomonas putida. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009720:464078:469078469078469827750Xanthobacter autotrophicus Py2, complete genomeGntR family transcriptional regulator5e-52204
NC_011894:5787990:578847757884775789181705Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, GntR family3e-34145
NC_008254:2496622:250986125098612510598738Mesorhizobium sp. BNC1, complete genometranscriptional regulator, GntR family4e-32138
NC_020453:1025891:103670110367011037402702Agromonas oligotrophica S58 DNA, complete genomeAtrA transcriptional regulator3e-29128
NC_014640:5897421:590216059021605902852693Achromobacter xylosoxidans A8 chromosome, complete genomeGntR family transcriptional regulator1e-27123
NC_008258:1784637:180366018036601804325666Shigella flexneri 5 str. 8401, complete genomehypothetical protein2e-22106
AC_000091:1521976:152197615219761522641666Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator1e-22106
NC_010473:1607646:160888116088811609546666Escherichia coli str. K-12 substr. DH10B, complete genomepredicted DNA-binding transcriptional regulator1e-22106
NC_000913:1517051:151828615182861518951666Escherichia coli K12, complete genomepredicted DNA-binding transcriptional regulator1e-22106
NC_012759:1409086:141034514103451411010666Escherichia coli BW2952 chromosome, complete genomeputative DNA-binding transcriptional regulator1e-22106
NC_017328:1835108:185687918568791857601723Shigella flexneri 2002017 chromosome, complete genomeputative HTH-type transcriptional regulator yncC2e-22105
NC_004337:1783645:180433618043361805058723Shigella flexneri 2a str. 301, complete genomehypothetical protein2e-22105
NC_011830:2177187:220439422043942205059666Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, GntR family4e-1788.2
NC_010002:3357752:337233533723353373021687Delftia acidovorans SPH-1, complete genometranscriptional regulator, GntR family4e-1581.6
NC_015458:1692401:169240116924011693138738Pusillimonas sp. T7-7 chromosome, complete genomeGntR family transcriptional regulator6e-1477.8
NC_013739:2106662:212626421262642127019756Conexibacter woesei DSM 14684, complete genometranscriptional regulator, GntR family2e-1376.3
NC_012522:3038890:304323930432393043943705Rhodococcus opacus B4, complete genomeputative GntR family transcriptional regulator2e-1375.9
NC_014098:1258559:126150612615061262153648Bacillus tusciae DSM 2912 chromosome, complete genometranscriptional regulator, GntR family5e-1374.7
NC_016906:4123000:412848441284844129173690Gordonia polyisoprenivorans VH2 chromosome, complete genomeputative GntR family transcriptional regulator2e-1272.8
NC_014840:205723:266022266022266699678Pantoea sp. At-9b plasmid pPAT9B03, complete sequencetranscriptional regulator, GntR family2e-1272.8
NC_009664:4423829:451763545176354518357723Kineococcus radiotolerans SRS30216, complete genometranscriptional regulator, GntR family3e-1272
NC_017191:3901914:390191439019143902573660Bacillus amyloliquefaciens XH7 chromosome, complete genometranscriptional regulator5e-1271.6
NC_010170:1324758:133437413343741335066693Bordetella petrii, complete genomeprobable transcriptional regulator6e-1271.2
NC_020829:809457:813097813097813771675Pseudomonas denitrificans ATCC 13867, complete genometranscriptional regulator1e-1170.5
NC_010002:3357752:335915233591523359841690Delftia acidovorans SPH-1, complete genometranscriptional regulator, GntR family1e-1170.5
NC_007963:3553678:356654835665483567216669Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, GntR family1e-1170.1
NC_013524:392089:401901401901402647747Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genometranscriptional regulator, GntR family2e-1169.7
NC_010175:3712456:372623837262383726933696Chloroflexus aurantiacus J-10-fl, complete genomeGntR domain protein3e-1168.9
NC_016147:2964178:297771029777102978438729Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeGntR family transcriptional regulator3e-1168.9
UCMB5137:3660165:368860236886023689270669Bacillus atrophaeus UCMB-5137putative transcriptional regulator4e-1168.6
NC_018515:937994:937994937994938674681Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator5e-1168.2
NC_020272:20435:418114181142473663Bacillus amyloliquefaciens IT-45, complete genomeputative HTH-type transcriptional regulator YdhC9e-1167.4
NC_015563:2702787:271975127197512720407657Delftia sp. Cs1-4 chromosome, complete genomeGntR family transcriptional regulator1e-1066.6
NC_011961:891815:896992896992897783792Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequencetranscriptional regulater GntR family protein2e-1066.2
NC_015145:3657103:367579336757933676560768Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genometranscriptional regulator2e-1065.9
NC_020272:3396800:342166934216693422334666Bacillus amyloliquefaciens IT-45, complete genomeFatty acid metabolism regulator protein2e-1065.9
NC_009922:315870:338735338735339421687Alkaliphilus oremlandii OhILAs, complete genometranscriptional regulator, GntR family2e-1065.9
NC_009512:1691930:170640617064061707209804Pseudomonas putida F1, complete genometranscriptional regulator, GntR family7e-1064.3
NC_017986:4374979:438945543894554390258804Pseudomonas putida ND6 chromosome, complete genomeGntR family transcriptional regulator7e-1064.3
NC_007434:2449721:247662724766272477433807Burkholderia pseudomallei 1710b chromosome I, complete sequencetranscriptional regulator, gntR family6e-1064.3
NC_016593:762216:786841786841787500660Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completetranscriptional regulator, GntR9e-1063.9
NC_002947:4931476:493700649370064937698693Pseudomonas putida KT2440, complete genometranscriptional regulator, GntR family9e-1063.9
NC_008595:5168941:517071151707115171400690Mycobacterium avium 104, complete genometranscriptional regulator, GntR family protein1e-0963.5
NC_003063:2059311:206138320613832062171789Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein1e-0963.5
NC_016894:3329562:333153633315363332213678Acetobacterium woodii DSM 1030 chromosome, complete genomeGntR family transcriptional regulator2e-0963.2
NC_008686:1383891:140152714015271402195669Paracoccus denitrificans PD1222 chromosome 1, complete sequencetranscriptional regulator, GntR family3e-0962.4
NC_010501:4080937:408689040868904087633744Pseudomonas putida W619, complete genometranscriptional regulator, GntR family3e-0962
NC_008391:1210451:123699212369921237723732Burkholderia cepacia AMMD chromosome 2, complete sequencetranscriptional regulator, GntR family4e-0962
NC_008148:1859888:190316519031651903911747Rubrobacter xylanophilus DSM 9941, complete genometranscriptional regulator, GntR family4e-0961.6
NC_003305:1:126631266313373711Agrobacterium tumefaciens str. C58 chromosome linear, completetranscriptional regulator, GntR family5e-0961.6
NC_013947:1696671:171062117106211711286666Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, GntR family1e-0860.5
NC_012560:2315350:231535023153502316072723Azotobacter vinelandii DJ, complete genometranscriptional regulator, GntR1e-0860.5
NC_021150:2315362:231536223153622316084723Azotobacter vinelandii CA6, complete genometranscriptional regulator, GntR1e-0860.5
NC_020210:661236:668499668499669158660Geobacillus sp. GHH01, complete genomeHTH-type transcriptional regulator9e-0960.5
NC_007953:314872:320623320623321315693Burkholderia xenovorans LB400 chromosome 3, complete sequenceTranscriptional regulator, GntR family2e-0859.7
NC_014910:3458475:348208934820893482757669Alicycliphilus denitrificans BC chromosome, complete genomegntr domain protein2e-0859.7
NC_019940:2931500:295856629585662959279714Thioflavicoccus mobilis 8321 chromosome, complete genometranscriptional regulator2e-0859.3
NC_009440:1045882:105601610560161056675660Metallosphaera sedula DSM 5348 chromosome, complete genomeGntR family transcriptional regulator3e-0858.9
NC_009439:3770282:380040438004043801204801Pseudomonas mendocina ymp, complete genomeGntR family transcriptional regulator3e-0858.9
NC_007509:832473:839275839275839937663Burkholderia sp. 383 chromosome 3, complete sequencetranscriptional regulator, GntR family3e-0858.9
NC_002578:1434396:144095614409561441609654Thermoplasma acidophilum DSM 1728, complete genomeNta operon transcriptional regulator related protein4e-0858.5
NC_014210:5683616:569274356927435693420678Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, GntR family5e-0858.2
NC_008544:55451:779837798378645663Burkholderia cenocepacia HI2424 chromosome 3, complete sequencetranscriptional regulator, GntR family5e-0858.2
NC_007963:2232000:225526422552642255944681Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, GntR family7e-0857.8
NC_008596:4104476:412930241293024129928627Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, GntR family protein7e-0857.8
NC_019791:1272850:130005613000561300721666Caldisphaera lagunensis DSM 15908 chromosome, complete genometranscriptional regulator1e-0757
NC_014206:2971304:298470229847022985352651Geobacillus sp. C56-T3 chromosome, complete genomeGntR family transcriptional regulator1e-0757
NC_016906:3286384:328959032895903290342753Gordonia polyisoprenivorans VH2 chromosome, complete genomeputative GntR family transcriptional regulator1e-0757
NC_017271:4193000:422159942215994222318720Xanthomonas campestris pv. raphani 756C chromosome, completetranscriptional regulator MdcY family1e-0757
NC_016642:2440070:247139724713972472071675Pseudovibrio sp. FO-BEG1 chromosome, complete genomeGntR family transcriptional regulator1e-0756.6
NC_013939:1625491:163812216381221638790669Deferribacter desulfuricans SSM1, complete genomeGntR family transcriptional regulator2e-0756.2
NC_002754:1061851:108024710802471080885639Sulfolobus solfataricus P2, complete genomeTranscriptional regulator3e-0755.5
NC_008596:4104476:411410641141064114864759Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, GntR family protein3e-0755.5
NC_013520:1905554:191069019106901911397708Veillonella parvula DSM 2008, complete genometranscriptional regulator, GntR family3e-0755.5
NC_018524:4564493:457843645784364579053618Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomebacterial regulatory s, gntR family protein4e-0755.1
NC_009937:412302:415716415716416384669Azorhizobium caulinodans ORS 571, complete genomeGntR family transcriptional regulator5e-0754.7
NC_016582:10015558:100189221001892210019551630Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator6e-0754.7
NC_009142:5647737:565529756552975655986690Saccharopolyspora erythraea NRRL 2338, complete genomepossible transcriptional regulator, GntR family8e-0754.3
NC_008148:2231045:227183422718342272532699Rubrobacter xylanophilus DSM 9941, complete genometranscriptional regulator, GntR family7e-0754.3
NC_006582:4256915:425897342589734259593621Bacillus clausii KSM-K16, complete genometranscriptional regulator, GntR family7e-0754.3
NC_013939:1625491:163746116374611638132672Deferribacter desulfuricans SSM1, complete genomeGntR family transcriptional regulator8e-0753.9
NC_019970:929666:929666929666930433768Thermoanaerobacterium thermosaccharolyticum M0795, complete genometranscriptional regulator9e-0753.9
NC_018691:761560:778164778164778892729Alcanivorax dieselolei B5 chromosome, complete genomeGntR-family transcriptional regulator9e-0753.9
NC_014410:989698:989698989698990465768Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,transcriptional regulator, GntR family9e-0753.9
NC_018691:2810949:281205628120562812796741Alcanivorax dieselolei B5 chromosome, complete genomeGntR family transcriptional regulator1e-0653.9
NC_020911:3076791:308053030805303081186657Octadecabacter antarcticus 307, complete genomeGntR family transcriptional regulator1e-0653.5
NC_015856:268034:267125267125268093969Collimonas fungivorans Ter331 chromosome, complete genomeGntR family transcriptional regulator2e-0653.1
NC_013446:2655955:266091026609102661545636Comamonas testosteroni CNB-2, complete genometranscriptional regulator, GntR family2e-0652.8
NC_017275:927814:944351944351944989639Sulfolobus islandicus HVE10/4 chromosome, complete genomeGntR family transcriptional regulator3e-0652.4
NC_013411:2739989:274439727443972745095699Geobacillus sp. Y412MC61, complete genometranscriptional regulator, GntR family3e-0652.4
NC_014915:1880748:188433518843351885033699Geobacillus sp. Y412MC52 chromosome, complete genometranscriptional regulator, GntR family3e-0652.4
NC_020210:1908000:192856519285651929263699Geobacillus sp. GHH01, complete genomeHTH-type transcriptional regulator3e-0652.4
NC_014206:1745203:174693817469381747636699Geobacillus sp. C56-T3 chromosome, complete genomeGntR family transcriptional regulator3e-0652.4
NC_015724:339500:343813343813344547735Cupriavidus necator N-1 plasmid BB2p, complete sequenceGntR family transcriptional regulator3e-0652.4
NC_008314:1955793:195959419595941960286693Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator4e-0652
NC_012587:3177583:317681031768103177586777Rhizobium sp. NGR234, complete genomeputative transcriptional regulator, GntR family4e-0651.6
NC_015145:92397:917359173592400666Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomeGntR family transcriptional regulator5e-0651.6
NC_008209:695269:716807716807717463657Roseobacter denitrificans OCh 114, complete genomeputative transcriptional regulator6e-0651.2
NC_014815:4621552:465611546561154656822708Micromonospora sp. L5 chromosome, complete genometranscriptional regulator, gntr family6e-0651.2
NC_013592:3263005:328412532841253284826702Dickeya dadantii Ech586, complete genometranscriptional regulator, GntR family6e-0651.2
NC_013947:5546315:554851655485165549172657Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, GntR family6e-0651.2
NC_011959:131800:135215135215135898684Thermomicrobium roseum DSM 5159, complete genomeGntR-family transcriptional regulator9e-0650.4
NC_013729:4835452:485750648575064858159654Kribbella flavida DSM 17836, complete genometranscriptional regulator, GntR family1e-0550.4
NC_007963:2777066:277978327797832780505723Chromohalobacter salexigens DSM 3043, complete genomeGntR-like protein1e-0550.4