Pre_GI Gene

Some Help

Host: NC_003305 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003305:1 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
622897276hypothetical protein
9351648714hypothetical proteinBLASTP
18051969165transposaseQuickGO ontology
19922375384transposaseQuickGO ontologyBLASTP
25592978420hypothetical proteinBLASTP
338548031419hypothetical proteinBLASTP
48235077255hypothetical proteinBLASTP
51705364195hypothetical protein
550265691068exopolysaccharide production proteinQuickGO ontologyBLASTP
65967375780hypothetical proteinBLASTP
75167857342transcriptional regulator ArsR familyQuickGO ontologyBLASTP
80858774690hypothetical proteinBLASTP
89329336405hypothetical proteinBLASTP
93339596264hypothetical proteinBLASTP
999010541552hypothetical proteinBLASTP
1058110880300phosphoglyceromutaseQuickGO ontologyBLASTP
1087711170294phosphoglyceromutaseQuickGO ontologyBLASTP
1124111624384hypothetical proteinBLASTP
1169512231537hypothetical proteinBLASTP
1266313373711transcriptional regulator GntR familyQuickGO ontologyBLASTP
13404145191116ABC transporter nucleotide bindingATPase protein sugarQuickGO ontologyBLASTP
1451615445930ABC transporter membrane spanning protein sugarQuickGO ontologyBLASTP
1545716338882ABC transporter membrane spanning protein sugarQuickGO ontologyBLASTP
16360179281569ABC transporter membrane spanning protein sugarQuickGO ontologyBLASTP
18000203302331oligo alginate lyaseQuickGO ontologyBLASTP