Pre_GI: BLASTP Hits

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Query: NC_009800:12162:22812 Escherichia coli HS, complete genome

Start: 22812, End: 23627, Length: 816

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011415:11381:2085720857222781422Escherichia coli SE11 chromosome, complete genomehypothetical protein3e-144511
NC_013361:11382:2086820868222891422Escherichia coli O26:H11 str. 11368 chromosome, complete genomeT3SS effector EspX8e-144509
NC_011741:11381:2085920859222801422Escherichia coli IAI1 chromosome, complete genomehypothetical protein8e-144509
CU928160:11381:2085920859222801422Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein8e-144509
NC_013364:11382:2085220852222731422Escherichia coli O111:H- str. 11128, complete genomeT3SS effector-like protein EspX1e-143508
AP010958:12660:2213722137235581422Escherichia coli O103:H2 str. 12009 DNA, complete genomeT3SS effector-like protein EspX-homolog8e-143506
NC_013353:12660:2213722137235581422Escherichia coli O103:H2 str. 12009, complete genomeT3SS effector protein EspX8e-143506
NC_013008:11938:2333023330247511422Escherichia coli O157:H7 str. TW14359 chromosome, complete genomenon-LEE-encoded type III effector9e-130462
NC_011353:12000:2333023330247511422Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein9e-130462
NC_002695:12000:2332923329247501422Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein9e-130462
NC_002655:12000:2333023330247511422Escherichia coli O157:H7 EDL933, complete genomehypothetical protein9e-130462
NC_013941:12000:2331123311247321422Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein4e-129460
NC_011751:12000:2326823268246891422Escherichia coli UMN026 chromosome, complete genomehypothetical protein2e-128457
NC_011750:12047:2712127121285421422Escherichia coli IAI39 chromosome, complete genomehypothetical protein6e-126450
NC_009801:11921:2213822138234601323Escherichia coli E24377A, complete genomehypothetical protein5e-121434
CU928145:11394:2087220872219931122Escherichia coli 55989 chromosome, complete genomefragment of conserved hypothetical protein (partial)4e-81301
NC_011748:11394:2087220872219931122Escherichia coli 55989, complete genome4e-81301
NC_007384:16500:2607626076271971122Shigella sonnei Ss046, complete genomehypothetical protein9e-79293
NC_016822:15401:2529625296264171122Shigella sonnei 53G, complete genomehypothetical protein9e-79293
CP002516:4081484:4088343408834340897641422Escherichia coli KO11, complete genome1e-49196
NC_010468:3970995:3978666397866639800861421Escherichia coli ATCC 8739, complete genome2e-46186
NC_012967:12161:240542405424404351Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein2e-45182