Pre_GI: BLASTP Hits

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Query: NC_009664:4377777:4397837 Kineococcus radiotolerans SRS30216, complete genome

Start: 4397837, End: 4398997, Length: 1161

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014391:3445672:3461080346108034622341155Micromonospora aurantiaca ATCC 27029 chromosome, complete genomehistidine kinase dimerization and phosphoacceptor region2e-97356
NC_016113:11500:3003030030312051176Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequencesensor kinase6e-93341
NC_017955:3731480:3744254374425437455401287Modestobacter marinus, complete genometwo-component integral membrane sensor signal transduction histidine kinase7e-56218
NC_017955:2494640:2513712251371225148511140Modestobacter marinus, complete genometwo component integral membrane sensor signal transduction histidine kinase3e-22106
NC_008699:1067855:1070611107061110717891179Nocardioides sp. JS614, complete genomehistidine kinase, dimerisation and phosphoacceptor region9e-22104
NC_015953:2059083:2077758207775820791791422Streptomyces sp. SirexAA-E chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase8e-2098.2
NC_016582:6811273:6826277682627768277011425Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative two-component system sensor kinase8e-1995.1
NC_013929:6008072:6016109601610960174521344Streptomyces scabiei 87.22 chromosome, complete genometwo-component system sensor kinase8e-1995.1
NC_013595:1851226:1862814186281418639681155Streptosporangium roseum DSM 43021, complete genomeHistidine kinase4e-1892.8
NC_016111:2257166:2259667225966722609771311Streptomyces cattleya NRRL 8057, complete genometwo-component system sensor kinase1e-1791.3
NC_013595:3541012:3541674354167435427921119Streptosporangium roseum DSM 43021, complete genomeputative two-component system sensor kinase2e-1790.9
NC_013947:1956923:1976270197627019774211152Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehistidine kinase2e-1790.5
NC_016582:6811273:6815992681599268171731182Streptomyces bingchenggensis BCW-1 chromosome, complete genomehistidine kinase2e-1790.5
NC_013729:4835452:4840812484081248419781167Kribbella flavida DSM 17836, complete genomehistidine kinase4e-1789.4
NC_016114:4333390:4341936434193643432521317Streptomyces flavogriseus ATCC 33331 chromosome, complete genomehistidine kinase dimerization and phosphoacceptor region5e-1789
NC_021177:2185898:2204422220442222057951374Streptomyces fulvissimus DSM 40593, complete genomeIntegral membrane sensor signal transduction histidine kinase8e-1788.6
NC_009921:3854969:3885817388581738870341218Frankia sp. EAN1pec, complete genomeintegral membrane sensor signal transduction histidine kinase1e-1687.8
NC_018750:3741581:3758691375869137598181128Streptomyces venezuelae ATCC 10712, complete genomeputative two-component system sensor kinase2e-1584
NC_015957:8569721:8590806859080685921791374Streptomyces violaceusniger Tu 4113 chromosome, complete genomeputative signal transduction histidine kinase2e-1584
NC_010407:2406113:2421488242148824229241437Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative two-component system sensor kinase2e-1584
NC_015514:3911655:3936688393668839379621275Cellulomonas fimi ATCC 484 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase2e-1583.6
NC_018868:1271742:1274986127498612762121227Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehistidine kinase3e-1583.2
NC_010572:4585500:4598066459806645993851320Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative two-component system sensor kinase1e-1480.9
NC_014550:1581812:1616675161667516179071233Arthrobacter arilaitensis Re117, complete genomeputative signal transduction histidine kinase2e-1480.9
NC_013131:8029621:8051812805181280530111200Catenulispora acidiphila DSM 44928, complete genomehistidine kinase2e-1480.5
NC_003888:4523500:4536527453652745378971371Streptomyces coelicolor A3(2), complete genometwo-component sensor kinase2e-1480.5
NC_014210:2372813:2394666239466623958471182Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,integral membrane sensor signal transduction histidine kinase3e-1480.1
NC_013929:1119384:1127261112726111284631203Streptomyces scabiei 87.22 chromosome, complete genometwo-component system sensor kinase2e-1480.1
NC_003888:4031299:4032042403204240333671326Streptomyces coelicolor A3(2), complete genometwo-component system sensor kinase4e-1479.7
NC_021177:5697210:5720678572067857218771200Streptomyces fulvissimus DSM 40593, complete genomeSensor-histidine kinase7e-1478.6
NC_015953:6212366:6240356624035662415821227Streptomyces sp. SirexAA-E chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase8e-1478.6
NC_018750:5399316:5414659541465954158551197Streptomyces venezuelae ATCC 10712, complete genomeputative two-component system sensor kinase1e-1378.2
NC_013169:2423863:2453428245342824546421215Kytococcus sedentarius DSM 20547, complete genomesignal transduction histidine kinase1e-1378.2
NC_008596:2873675:2875590287559028767471158Mycobacterium smegmatis str. MC2 155, complete genomesensor kinase2e-1377
NC_013739:717352:7210357210357221741140Conexibacter woesei DSM 14684, complete genomeintegral membrane sensor signal transduction histidine kinase2e-1377
NC_011886:4336417:4361861436186143632371377Arthrobacter chlorophenolicus A6, complete genomehistidine kinase5e-1375.9
NC_009921:3999040:4016718401671840180551338Frankia sp. EAN1pec, complete genomeintegral membrane sensor signal transduction histidine kinase1e-1274.7
NC_013595:196493:1988221988222000961275Streptosporangium roseum DSM 43021, complete genomeSignal transduction histidine kinase-like protein1e-1274.3
NC_013947:656140:6795396795396806811143Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehistidine kinase1e-1274.3
NC_003888:7866148:7876048787604878772411194Streptomyces coelicolor A3(2), complete genomeprobable two-component system sensor kinase3e-1273.2
NC_009380:4729340:4748874474887447500971224Salinispora tropica CNB-440 chromosome, complete genomehistidine kinase, dimerisation and phosphoacceptor region5e-1272.8
NC_008148:1567703:1570582157058215718051224Rubrobacter xylanophilus DSM 9941, complete genomeperiplasmic sensor signal transduction histidine kinase5e-1272.4
NC_013947:656140:6593696593696605801212Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehistidine kinase7e-1272
NC_014210:5752651:5758783575878357599311149Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,integral membrane sensor signal transduction histidine kinase1e-1171.2
NC_016801:394400:4055124055124067381227Corynebacterium diphtheriae C7 (beta) chromosome, complete genometwo-component system sensor histidine kinase2e-1170.9
NC_013093:2633000:2668343266834326693741032Actinosynnema mirum DSM 43827, complete genomehistidine kinase2e-1170.5
NC_006177:520055:5342435342435361441902Symbiobacterium thermophilum IAM 14863, complete genometwo-component sensor histidine kinase2e-1170.1
NC_016943:1314500:1329748132974813308811134Blastococcus saxobsidens DD2, complete genomeTwo component signal transduction histidine kinase3e-1170.1
NC_009921:4399000:4412349441234944136831335Frankia sp. EAN1pec, complete genomeintegral membrane sensor signal transduction histidine kinase5e-1169.3
NC_013235:593289:6067186067186078661149Nakamurella multipartita DSM 44233, complete genomehistidine kinase5e-1168.9
NC_013929:1584906:1603147160314716041541008Streptomyces scabiei 87.22 chromosome, complete genometwo component sensor kinase7e-1168.6
NC_018750:6237875:6251329625132962524501122Streptomyces venezuelae ATCC 10712, complete genomeputative two-component system sensor kinase8e-1168.6
NC_013595:5176000:5197494519749451986931200Streptosporangium roseum DSM 43021, complete genomeSignal transduction histidine kinase-like protein3e-1066.6
NC_015957:5310000:5318013531801353192151203Streptomyces violaceusniger Tu 4113 chromosome, complete genomeputative signal transduction histidine kinase4e-1066.2
NC_015953:4746983:4769152476915247703781227Streptomyces sp. SirexAA-E chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase9e-1065.1
NC_013757:2046000:2057159205715920583281170Geodermatophilus obscurus DSM 43160, complete genomehistidine kinase dimerization and phosphoacceptor region8e-1065.1
NC_016109:5543112:5559633555963355608381206Kitasatospora setae KM-6054, complete genomeputative two-component system sensor kinase1e-0964.3
NC_013595:606096:6196566196566207741119Streptosporangium roseum DSM 43021, complete genomeputative two-component system sensor kinase2e-0964.3
NC_019673:1988853:2012554201255420136751122Saccharothrix espanaensis DSM 44229 complete genomeputative histidine kinase2e-0963.9
NC_009921:8648994:8669977866997786714671491Frankia sp. EAN1pec, complete genomeintegral membrane sensor signal transduction histidine kinase2e-0963.9
NC_012669:96966:1108371108371120181182Beutenbergia cavernae DSM 12333, complete genomehistidine kinase2e-0963.5
NC_016109:3591401:3591401359140135925191119Kitasatospora setae KM-6054, complete genomeputative two-component system sensor kinase4e-0962.8
NC_015957:6859259:6869496686949668707371242Streptomyces violaceusniger Tu 4113 chromosome, complete genomeputative signal transduction histidine kinase2e-0860.5
NC_010162:7620000:7628585762858576297421158Sorangium cellulosum 'So ce 56', complete genomeputative two-component system sensor kinase3e-0860.1
NC_017219:1830353:1846433184643318488202388Bifidobacterium longum subsp. infantis ATCC 15697, complete genometwo-component sensor kinase5e-0859.3
NC_011593:1830500:1846652184665218490302379Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,integral membrane sensor signal transduction histidine kinase4e-0859.3
NC_018524:4988810:5020000502000050210461047Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomehistidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein6e-0858.9
NC_009953:1831000:1831031183103118323081278Salinispora arenicola CNS-205 chromosome, complete genomehistidine kinase8e-0858.5
NC_016935:7426389:7438666743866674404591794Paenibacillus mucilaginosus 3016 chromosome, complete genomeresponse regulator1e-0758.2
NC_010571:2041277:2067947206794720691041158Opitutus terrae PB90-1, complete genomeintegral membrane sensor signal transduction histidine kinase1e-0758.2
NC_018720:993869:1013685101368510149651281Bifidobacterium asteroides PRL2011 chromosome, complete genometwo-component sensor kinase2e-0757.4
NC_013169:612456:6148136148136161291317Kytococcus sedentarius DSM 20547, complete genomehistidine kinase2e-0757.4
NC_007907:4692336:4711510471151047129581449Desulfitobacterium hafniense Y51, complete genomehypothetical protein2e-0757
NC_015690:7334786:7346928734692873483971470Paenibacillus mucilaginosus KNP414 chromosome, complete genomeresponse regulator3e-0756.6
NC_013169:1759900:1776071177607117774201350Kytococcus sedentarius DSM 20547, complete genomesignal transduction histidine kinase3e-0756.6
NC_017218:1166844:1186511118651111889672457Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomehistidine kinase4e-0756.2
NC_020272:3706722:3708448370844837095781131Bacillus amyloliquefaciens IT-45, complete genomesensor signal transduction histidine kinase1e-0654.3
NC_014958:514225:5189025189025203411440Deinococcus maricopensis DSM 21211 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase2e-0653.9
NC_020410:198000:2198972198972210271131Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeSensory transduction protein kinase2e-0653.9
NC_009725:200071:2206612206612217911131Bacillus amyloliquefaciens FZB42, complete genomesensory transduction protein kinase2e-0653.9
NC_014210:2597000:2616442261644226179321491Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,integral membrane sensor signal transduction histidine kinase2e-0653.5
NC_014960:1910202:1925461192546119270711611Anaerolinea thermophila UNI-1, complete genomeABC transporter ATP-binding protein4e-0652.8
NC_017191:183500:2050982050982062281131Bacillus amyloliquefaciens XH7 chromosome, complete genomesensory transduction protein kinase5e-0652.4
NC_017188:177500:1991881991882003181131Bacillus amyloliquefaciens TA208 chromosome, complete genomeSensor histidine kinase5e-0652.4
NC_009664:4423829:4492004449200444931791176Kineococcus radiotolerans SRS30216, complete genomeintegral membrane sensor signal transduction histidine kinase6e-0652.4
NC_008025:1799106:1813191181319118148851695Deinococcus geothermalis DSM 11300, complete genomeperiplasmic sensor signal transduction histidine kinase9e-0651.6