Pre_GI: BLASTP Hits

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Query: NC_009378:106193:106193 Yersinia pestis Pestoides F plasmid MT, complete sequence

Start: 106193, End: 111433, Length: 5241

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Atypical strain isolated from the former Soviet Union, USSR. This strain lacks a plasminogen activator and is virulent by the aerosol route. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016846:24500:4675446754520125259Klebsiella pneumoniae subsp. pneumoniae HS11286 plasmid pKPHS2,conjugal transfer nickase/helicase TraI02110
NC_010660:175200:1832651832651882354971Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence01941
NC_007608:97092:1033061033061082044899Shigella boydii Sb227 plasmid pSB4_227, complete sequenceoriT nicking and unwinding protein, fragment01920
NC_007385:157516:1693421693421736254284Shigella sonnei Ss046 plasmid pSS_046, complete sequenceoriT nicking and unwinding protein, fragment01824
NC_007607:87000:96517965171007104194Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceoriT nicking and unwinding protein, fragment01652
NC_004851:191709:2005772005772040773501Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceoriT nicking and unwinding protein01298
NC_017319:192482:2005052005052039543450Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceOriT nicking and unwinding protein01278
NC_017319:192482:1991441991442005081365Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceOriT nicking and unwinding protein5e-170599
NC_004851:191709:1992161992162005801365Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceoriT nicking and unwinding protein6e-169596
NC_007414:56508:8899288992902901299Escherichia coli O157:H7 EDL933 plasmid pO157, complete sequenceDNA helicase2e-129464
NC_009998:62000:6726667266732265961Shewanella baltica OS195 plasmid pS19501, complete sequenceconjugative transfer relaxase protein TraI1e-107392
NC_004460:708416:7159707159707217565787Vibrio vulnificus CMCP6 chromosome II, complete sequenceATP-dependent exoDNAse, alpha subunit1e-93346
NC_007385:157516:175043175043175879837Shigella sonnei Ss046 plasmid pSS_046, complete sequenceoriT nicking and unwinding protein, fragment2e-65252
NC_017319:192482:198752198752199123372Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceOriT nicking and unwinding protein4e-54214
NC_004851:191709:198803198803199195393Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceoriT nicking and unwinding protein4e-54214
NC_007607:87000:100659100659101351693Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceputative DNA helicase I, fragment5e-53211
NC_009484:2660048:2674385267438526771562772Acidiphilium cryptum JF-5 chromosome, complete genomeexonuclease V subunit alpha6e-51204
NC_008322:1186000:1188914118891411920213108Shewanella sp. MR-7, complete genomeTrwC protein4e-51204
NC_007607:87000:960909609096509420Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceoriT nicking and unwinding protein, fragment2e-50202
NC_007608:97092:102927102927103346420Shigella boydii Sb227 plasmid pSB4_227, complete sequenceoriT nicking and unwinding protein, fragment4e-50201
NC_007722:851129:8691878691878720992913Erythrobacter litoralis HTCC2594, complete genomeTrwC protein5e-49197
NC_007722:168937:1893461893461922582913Erythrobacter litoralis HTCC2594, complete genomeTrwC protein1e-48196
NC_007794:2304768:2324303232430323259311629Novosphingobium aromaticivorans DSM 12444, complete genomeTrwC protein1e-47193
NC_016626:1751159:1751159175115917542153057Burkholderia sp. YI23 plasmid byi_1p, complete sequenceputative traC, type IV secretion system4e-46188
NC_009007:57804:7601176011793463336Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequenceTraI3e-40168
NC_015377:34445:5672856728596222895Burkholderia gladioli BSR3 plasmid bgla_2p, complete sequenceTrwC protein4e-39164
NC_011891:1225000:1242880124288012456602781Anaeromyxobacter dehalogenans 2CP-1, complete genomeconjugative relaxase domain protein1e-38163
NC_011916:467106:4887684887684915782811Caulobacter crescentus NA1000 chromosome, complete genomeDNA relaxase/conjugal transfer nickase-helicase TrwC1e-37160
NC_010606:25090:2872928729308792151Acinetobacter baumannii ACICU plasmid pACICU2, complete sequenceTrwC protein7e-38160
NC_014819:25765:4311743117462603144Asticcacaulis excentricus CB 48 plasmid pASTEX02, completeconjugative relaxase domain protein2e-32142
NC_015850:1006980:1016198101619810193653168Acidithiobacillus caldus SM-1 chromosome, complete genomeputative TraI protein2e-31139
NC_015458:327009:3562813562813591782898Pusillimonas sp. T7-7 chromosome, complete genomeTrwC9e-31137
NC_007575:1694877:1701208170120817045463339Sulfurimonas denitrificans DSM 1251, complete genomeexonuclease V subunit alpha2e-30136
NC_016631:3917253:3931643393164339343962754Granulicella mallensis MP5ACTX8 chromosome, complete genomeconjugative relaxase domain-containing protein2e-27126
NC_007722:2954876:2959510295951029620652556Erythrobacter litoralis HTCC2594, complete genomehypothetical protein4e-27125
NC_010571:2423732:2437973243797324407052733Opitutus terrae PB90-1, complete genomeconjugative relaxase domain protein5e-27124
NC_013422:991500:1012572101257210154032832Halothiobacillus neapolitanus c2, complete genomeconjugative relaxase domain protein2e-26123
NC_012483:3672768:3676616367661636793962781Acidobacterium capsulatum ATCC 51196, complete genomeconjugative relaxase domain protein2e-25119
NC_020453:3950838:3987555398755539886791125Agromonas oligotrophica S58 DNA, complete genomeputative ATP-dependent exoDNAse (exonuclease V) subunit alpha2e-25119
NC_012483:3731542:3754841375484137575942754Acidobacterium capsulatum ATCC 51196, complete genomeconjugative relaxase domain protein4e-25118
NC_011296:281930:2901722901722957035532Thermodesulfovibrio yellowstonii DSM 11347, complete genomehypothetical protein3e-20102
NC_013730:2359939:2384855238485523876142760Spirosoma linguale DSM 74, complete genomeconjugative relaxase domain protein1e-19100
NC_010170:3944228:3975774397577439785002727Bordetella petrii, complete genomeconjugal transfer protein5e-1998.2
NC_015563:3203012:3211320321132032126211302Delftia sp. Cs1-4 chromosome, complete genomeconjugative relaxase domain-containing protein9e-1894
NC_016609:4233701:4273299427329942760132715Niastella koreensis GR20-10 chromosome, complete genomeconjugative relaxase domain-containing protein2e-1689.7
NC_013132:7954000:7969595796959579722072613Chitinophaga pinensis DSM 2588, complete genomeconjugative relaxase domain protein3e-1585.9
NC_009256:2945059:2956180295618029578051626Burkholderia vietnamiensis G4 chromosome 1, complete sequencehypothetical protein4e-1585.1
NC_015671:557720:5632625632625661532892Cellvibrio gilvus ATCC 13127 chromosome, complete genomeTrwC relaxase2e-1483.2
NC_014830:3387479:3426762342676234300523291Intrasporangium calvum DSM 43043 chromosome, complete genomeTrwC relaxase2e-1483.2
NC_015514:3508022:3522251352225135251422892Cellulomonas fimi ATCC 484 chromosome, complete genomeconjugative relaxase domain-containing protein1e-1380.5
NC_012483:729000:752677752677753114438Acidobacterium capsulatum ATCC 51196, complete genomeDNA helicase domain protein4e-1378.6
NC_010793:1695716:1698219169821917002312013Orientia tsutsugamushi str. Ikeda, complete genomeputative conjugative transfer protein TraA1e-1277
NC_016585:116143:1339371339371372033267Azospirillum lipoferum 4B plasmid AZO_p1, complete sequenceputative ATP-dependent exoDNAse1e-1277
NC_010793:1468849:1475436147543614782402805Orientia tsutsugamushi str. Ikeda, complete genomeputative conjugative transfer protein TraA3e-1275.9
NC_010660:175200:182964182964183155192Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence5e-1275.1
NC_010793:1158279:1162791116279111651962406Orientia tsutsugamushi str. Ikeda, complete genomeputative conjugative transfer protein TraA2e-1172.8
NC_010793:1811401:1869177186917718715432367Orientia tsutsugamushi str. Ikeda, complete genomeputative conjugative transfer protein TraA3e-1172.4
NC_010606:25090:3084530845319811137Acinetobacter baumannii ACICU plasmid pACICU2, complete sequenceTrwC protein3e-1172.4
NC_012803:3691:3912039120426443525Micrococcus luteus NCTC 2665, complete genomeconjugative relaxase domain protein, TrwC/TraI family8e-1170.9
NC_013714:1048783:1058087105808710622714185Bifidobacterium dentium Bd1, complete genomeTrwC relaxase1e-1070.5
NC_010943:3069082:3094419309441930971992781Stenotrophomonas maltophilia K279a, complete genomeputative conjugal transfer protein TraA1e-1070.1
NC_010793:1922000:1933705193370519347961092Orientia tsutsugamushi str. Ikeda, complete genomeputative conjugative transfer protein TraA1e-1070.1
NC_019673:1988853:2027358202735820317464389Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein6e-1068.2
NC_013235:2129982:2155767215576721594623696Nakamurella multipartita DSM 44233, complete genomeTrwC relaxase6e-1068.2
NC_010793:1695716:1702951170295117046991749Orientia tsutsugamushi str. Ikeda, complete genomeputative conjugative transfer protein TraA1e-0967
NC_013169:612456:6365886365886401423555Kytococcus sedentarius DSM 20547, complete genomeTrwC relaxase2e-0966.2
NC_011365:1969198:198678719867871987755969Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeTrwC relaxase2e-0966.2
NC_008278:6885254:6885254688525468896694416Frankia alni ACN14a, complete genomehypothetical protein; Putative conjugal transfer protein traA3e-0965.9
NC_013757:780835:7808357808357863455511Geodermatophilus obscurus DSM 43160, complete genomeTrwC relaxase7e-0964.7
NC_014158:233733:2645282645282674012874Tsukamurella paurometabola DSM 20162 chromosome, complete genomeTrwC relaxase6e-0861.6
NC_008697:118859:1188591188591247625904Nocardioides sp. JS614 plasmid pNOCA01, complete sequenceDNA primase catalytic core, N-terminal domain6e-0861.2
NC_017955:3670670:3715007371500737204815475Modestobacter marinus, complete genomeDNA primase1e-0760.5
NC_015508:296856:2968562968563006473792Agrobacterium sp. H13-3 chromosome linear, complete sequenceConjugal transfer protein traA2e-0760.1
NC_017044:702483:7137857137857179214137Rickettsia parkeri str. Portsmouth chromosome, complete genomeconjugal transfer protein TraA2e-0759.3
NC_014550:3316115:3319383331938333220312649Arthrobacter arilaitensis Re117, complete genome4e-0758.9
NC_018681:5551000:5551247555124755572405994Nocardia brasiliensis ATCC 700358 chromosome, complete genomehypothetical protein5e-0758.5
NC_011027:817311:8179938179938201942202Chlorobaculum parvum NCIB 8327, complete genomehelicase, RecD/TraA family4e-0758.5
NC_017955:1667500:1668039166803916735375499Modestobacter marinus, complete genomeDNA primase1e-0657
NC_010793:541040:5689105689105702081299Orientia tsutsugamushi str. Ikeda, complete genomeputative conjugative transfer protein TraA2e-0656.6
NC_010793:357000:3642693642693655851317Orientia tsutsugamushi str. Ikeda, complete genomeputative conjugative transfer protein TraA2e-0656.6
NC_010793:81219:8427684276864712196Orientia tsutsugamushi str. Ikeda, complete genomeexodeoxyribonuclease V alpha subunit2e-0656.2
NC_011991:65368:6536865368694384071Agrobacterium vitis S4 plasmid pAtS4b, complete sequenceTi-type conjugative transfer relaxase TraA3e-0655.8
NC_017028:1030000:1046311104631110504474137Candidatus Rickettsia amblyommii str. GAT-30V chromosome, completeconjugal transfer protein TraA3e-0655.8
NC_017955:3057592:3092495309249530980295535Modestobacter marinus, complete genomeDNA primase4e-0655.5
NC_008699:1673181:1673181167318116785745394Nocardioides sp. JS614, complete genomeDNA primase catalytic core, N-terminal domain8e-0654.3