Pre_GI: BLASTP Hits

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Query: NC_009092:3682413:3684492 Shewanella loihica PV-4, complete genome

Start: 3684492, End: 3685076, Length: 585

Host Lineage: Shewanella loihica; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain is an environmental isolate from the Naha Vents, Hawaii, in the Pacific Ocean. Psychrotolerant bacterium. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. Shewanella loihica is a psychrotolerant deep sea bacterium. This organism is able to reduce iron, manganese and uranium and may be useful for bioremediation at low temperatures.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009634:299327:323157323157323735579Methanococcus vannielii SB chromosome, complete genomeTetR family transcriptional regulator4e-24110
NC_014507:1127115:113953511395351140116582Methanoplanus petrolearius DSM 11571 chromosome, complete genomeTetR family transcriptional regulator5e-24110
NC_009637:1421885:142340014234001423993594Methanococcus maripaludis C7 chromosome, complete genomeTetR family transcriptional regulator4e-23107
NC_009464:931647:953666953666954247582Uncultured methanogenic archaeon RC-I, complete genometranscription regulator (TetR family)3e-22104
NC_010529:23775:450444504445613570Cupriavidus taiwanensis plasmid pRALTA, complete sequenceputative transcriptional regulator, TetR family1e-1272.8
NC_020063:3352516:335943133594313360009579Enterobacteriaceae bacterium strain FGI 57, complete genometranscriptional regulator2e-1272.4
NC_009436:1141376:117882011788201179410591Enterobacter sp. 638, complete genomeTetR family transcriptional regulator3e-1271.6
NC_011184:2840713:284071328407132841279567Vibrio fischeri MJ11 chromosome I, complete sequencetranscriptional regulator, TetR family5e-1270.9
NC_015587:278000:289318289318289887570Hydrogenobaculum sp. SHO chromosome, complete genometranscriptional regulator, TetR family6e-1270.5
NC_015557:278000:289282289282289851570Hydrogenobaculum sp. 3684 chromosome, complete genometranscriptional regulator, TetR family7e-1270.5
NC_010814:3673983:368707836870783687647570Geobacter lovleyi SZ, complete genometranscriptional regulator, TetR family7e-1270.5
NC_020411:278000:289314289314289883570Hydrogenobaculum sp. HO, complete genometranscriptional regulator, TetR family7e-1270.5
NC_010814:3673983:369454936945493695133585Geobacter lovleyi SZ, complete genometranscriptional regulator, TetR family2e-1168.9
NC_015589:3340500:335968733596873360313627Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeregulatory protein TetR6e-1063.9
NC_014758:310394:344457344457345041585Calditerrivibrio nitroreducens DSM 19672 chromosome, completetranscriptional regulator, tetr family2e-0962
NC_014376:2766326:276885827688582769421564Clostridium saccharolyticum WM1 chromosome, complete genometranscriptional regulator, TetR family4e-0961.2
NC_020291:2291418:230792023079202308588669Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometranscriptional regulator, TetR family8e-0960.5
NC_014387:3227875:323418632341863234752567Butyrivibrio proteoclasticus B316 chromosome 1, complete genomeTetR family transcriptional regulator1e-0860.1
NC_017161:1117741:112188511218851122460576Hydrogenobacter thermophilus TK-6 chromosome, complete genomeTetR family transcriptional regulator2e-0858.9
NC_013799:1117750:112189411218941122469576Hydrogenobacter thermophilus TK-6, complete genometranscriptional regulator, TetR family2e-0858.9
NC_011772:2860000:286563128656312866197567Bacillus cereus G9842, complete genometranscriptional regulator, TetR family2e-0858.9
NC_013854:1277106:128092412809241281535612Azospirillum sp. B510, complete genometranscriptional regulator2e-0858.9
NC_012997:2941627:294478229447822945357576Teredinibacter turnerae T7901, complete genometranscriptional Regulator, TetR family3e-0858.5
NC_011725:4600000:461495346149534615591639Bacillus cereus B4264 chromosome, complete genomeTetR family transcriptional regulator3e-0858.2
NC_014335:2274774:227990022799002280316417Bacillus cereus biovar anthracis str. CI chromosome, completeTetR family transcriptional regulator4e-0857.8
NC_007530:2716885:272025427202542720820567Bacillus anthracis str. 'Ames Ancestor', complete genometranscriptional regulator, tetr family4e-0857.8
NC_003997:2715623:272012627201262720692567Bacillus anthracis str. Ames, complete genometranscriptional regulator, TetR family4e-0857.8
NC_005957:2756000:275948827594882760054567Bacillus thuringiensis serovar konkukian str. 97-27, completetranscriptional regulator, TetR family4e-0857.8
NC_008600:2792584:279595427959542796520567Bacillus thuringiensis str. Al Hakam, complete genometranscriptional regulator, TetR family4e-0857.8
NC_006274:2779380:278403727840372784603567Bacillus cereus E33L, complete genometranscriptional regulator, TetR family4e-0857.8
NC_005945:2716000:272058927205892721155567Bacillus anthracis str. Sterne, complete genometranscriptional regulator, TetR family4e-0857.8
NC_014335:2718000:272272727227272723293567Bacillus cereus biovar anthracis str. CI chromosome, completeTetR family transcriptional regulator4e-0857.8
NC_011772:4565418:458020945802094580847639Bacillus cereus G9842, complete genometranscriptional regulator, TetR family4e-0857.8
NC_016818:1795576:183812718381271838744618Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completetranscriptional regulator4e-0857.8
NC_016779:2693790:269716026971602697726567Bacillus cereus F837/76 chromosome, complete genomeregulatory protein TetR4e-0857.8
NC_012659:2715651:272015427201542720720567Bacillus anthracis str. A0248, complete genomeTetR family transcriptional regulator4e-0857.8
NC_012581:1505276:151787015178701518436567Bacillus anthracis str. CDC 684 chromosome, complete genomeTetR family transcriptional regulator4e-0857.8
NC_011773:2782465:278583627858362786402567Bacillus cereus AH820 chromosome, complete genomeTetR family transcriptional regulator4e-0857.8
NC_008600:2353696:236310023631002363594495Bacillus thuringiensis str. Al Hakam, complete genometranscriptional regulator, TetR family6e-0857.4
NC_013406:5066769:508499650849965085649654Paenibacillus sp. Y412MC10 chromosome, complete genomeTetR family transcriptional regulator8e-0857
NC_015422:3366500:336988733698873370549663Alicycliphilus denitrificans K601 chromosome, complete genomeTetR family transcriptional regulator8e-0857
NC_013385:1064188:107194410719441072534591Ammonifex degensii KC4, complete genometranscriptional regulator, TetR family7e-0857
NC_011000:1262324:126468212646821265407726Burkholderia cenocepacia J2315 chromosome 1, complete sequenceTetR family regulatory protein7e-0857
NC_006361:498305:504157504157504795639Nocardia farcinica IFM 10152, complete genomeputative transcriptional regulator1e-0756.6
NC_008825:1113060:111747611174761118156681Methylibium petroleiphilum PM1, complete genomeputative transcription regulator protein1e-0756.6
NC_004193:375416:552830552830553441612Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator1e-0756.2
NC_014834:2264108:229729222972922298074783Rhodopseudomonas palustris DX-1 chromosome, complete genomeTetR family transcriptional regulator1e-0756.2
NC_015125:788931:793293793293793889597Microbacterium testaceum StLB037, complete genometranscriptional regulator1e-0756.2
NC_015682:205900:213249213249213854606Thermodesulfobacterium sp. OPB45 chromosome, complete genomeTetR family transcriptional regulator2e-0755.8
NC_015677:896673:896673896673897338666Ramlibacter tataouinensis TTB310 chromosome, complete genomeTetR family transcriptional regulator2e-0755.8
NC_017208:2942554:294785329478532948419567Bacillus thuringiensis serovar chinensis CT-43 chromosome, completetranscriptional repressor Bm3R12e-0755.8
NC_003909:2798622:280198928019892802555567Bacillus cereus ATCC 10987, complete genometranscriptional regulator, TetR family2e-0755.8
NC_011969:2706000:271071827107182711284567Bacillus cereus Q1 chromosome, complete genomeTetR family transcriptional regulator2e-0755.8
NC_004193:375416:375416375416675301299886Oceanobacillus iheyensis HTE831, complete genome2e-0755.8
NC_009633:337706:353145353145353717573Alkaliphilus metalliredigens QYMF chromosome, complete genomeTetR family transcriptional regulator2e-0755.5
NC_015578:2026741:205024220502422050808567Treponema primitia ZAS-2 chromosome, complete genomeTetR family transcriptional regulator2e-0755.5
UCMB5137:1594000:160367516036751604283609Bacillus atrophaeus UCMB-5137transcriptional regulator, TetR family protein4e-0754.7
NC_010557:207846:218909218909219496588Burkholderia ambifaria MC40-6 chromosome 3, complete sequencetranscriptional regulator, TetR family4e-0754.7
NC_008278:7409711:742530174253017425861561Frankia alni ACN14a, complete genomehypothetical protein4e-0754.7
NC_008781:3688965:371060337106033711274672Polaromonas naphthalenivorans CJ2, complete genometranscriptional regulator, TetR family3e-0754.7
NC_008268:3162824:3181094318109431822901197Rhodococcus sp. RHA1, complete genomeprobable transcriptional regulator5e-0754.3
NC_011899:1437981:145036314503631450923561Halothermothrix orenii H 168, complete genometranscriptional regulator, TetR family5e-0754.3
NC_003902:1416000:142181514218151422441627Xanthomonas campestris pv. campestris str. ATCC 33913, completetranscriptional regulator5e-0754.3
NC_010688:3515885:352608335260833526709627Xanthomonas campestris pv. campestris, complete genometranscriptional regulator, TetR family5e-0754.3
NC_002570:3911153:391820939182093918817609Bacillus halodurans C-125, complete genometranscriptional regulator (TetR/AcrR family)7e-0753.9
NC_002928:507749:515731515731516354624Bordetella parapertussis 12822, complete genomeputative TetR-family transcriptional regulator7e-0753.9
NC_008699:2916752:293651429365142937146633Nocardioides sp. JS614, complete genomeregulatory protein, TetR6e-0753.9
NC_012673:2535427:257965825796582580236579Exiguobacterium sp. AT1b, complete genometranscriptional regulator, TetR family7e-0753.5
NC_016023:755237:772087772087772674588Bacillus coagulans 36D1 chromosome, complete genomeTetR family transcriptional regulator7e-0753.5
NC_010814:155834:180041180041180643603Geobacter lovleyi SZ, complete genometranscriptional regulator, TetR family9e-0753.5
NC_009921:5275694:529638452963845297010627Frankia sp. EAN1pec, complete genometranscriptional regulator, TetR family9e-0753.5
NC_014532:2268078:226928422692842269913630Halomonas elongata DSM 2581, complete genometranscriptional regulator, TetR family1e-0653.1
NC_002927:506183:514187514187514810624Bordetella bronchiseptica RB50, complete genomeputative TetR-family transcriptional regulator9e-0753.1
NC_020409:393329:431903431903432490588Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeTranscriptional regulator, TetR family1e-0652.8
NC_012792:547967:585880585880586536657Variovorax paradoxus S110 chromosome 2, complete genometranscriptional regulator, TetR family1e-0652.8
NC_014310:1750817:175724317572431757839597Ralstonia solanacearum PSI07 megaplasmid, complete sequenceTetR family transcriptional regulator2e-0652.8
NC_013510:5499447:554217355421735542841669Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, TetR family2e-0652.4
NC_014220:2037560:204191920419192042590672Syntrophothermus lipocalidus DSM 12680 chromosome, complete genometranscriptional regulator, TetR family2e-0652.4
NC_009633:168266:220777220777221364588Alkaliphilus metalliredigens QYMF chromosome, complete genomeTetR family transcriptional regulator2e-0652.4
NC_013929:3986272:400539140053914006197807Streptomyces scabiei 87.22 chromosome, complete genomeTetR family transcriptional regulator2e-0652
NC_015589:3556197:356332135633213563923603Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeregulatory protein TetR2e-0652
NC_016935:2567039:261829326182932618892600Paenibacillus mucilaginosus 3016 chromosome, complete genomeTetR family transcriptional regulator2e-0652
NC_016641:3272500:328989932898993290471573Paenibacillus terrae HPL-003 chromosome, complete genomeTetR family transcriptional regulator3e-0652
NC_014318:5183975:518800651880065188611606Amycolatopsis mediterranei U32 chromosome, complete genomeTetR family transcriptional regulator3e-0651.6
NC_017186:5184000:518804051880405188645606Amycolatopsis mediterranei S699 chromosome, complete genomeTetR family transcriptional regulator3e-0651.6
NC_014976:759129:785436785436786035600Bacillus subtilis BSn5 chromosome, complete genomeTetR family transcriptional regulator3e-0651.6
NC_018515:4474000:447872144787214479305585Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator3e-0651.6
NC_014541:2978500:299438229943822994996615Ferrimonas balearica DSM 9799 chromosome, complete genometranscriptional regulator, TetR family4e-0651.2
NC_008699:833737:853126853126853728603Nocardioides sp. JS614, complete genomeregulatory protein, TetR4e-0651.2
NC_013205:19295:294872948730161675Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,transcriptional regulator, TetR family4e-0651.2
NC_015690:2039215:206876320687632069362600Paenibacillus mucilaginosus KNP414 chromosome, complete genomeTetR family transcriptional regulator4e-0651.2
NC_016629:3789554:382760938276093828244636Desulfovibrio africanus str. Walvis Bay chromosome, completeregulatory protein TetR5e-0650.8
NC_010170:1470755:148942714894271490008582Bordetella petrii, complete genometranscriptional regulator, TetR-family5e-0650.8
NC_011004:4183993:418399341839934184628636Rhodopseudomonas palustris TIE-1, complete genometranscriptional regulator, TetR family8e-0650.4
NC_015578:465814:467379467379467957579Treponema primitia ZAS-2 chromosome, complete genomeTetR family transcriptional regulator7e-0650.4
NC_013385:1882549:191438119143811914974594Ammonifex degensii KC4, complete genometranscriptional regulator, TetR family6e-0650.4
NC_016641:1369424:137716413771641377715552Paenibacillus terrae HPL-003 chromosome, complete genomeTetR family transcriptional regulator6e-0650.4
NC_016002:2453919:247043024704302471047618Pseudogulbenkiania sp. NH8B, complete genomeTetR family transcriptional regulator6e-0650.4
NC_014158:1651326:166301016630101663705696Tsukamurella paurometabola DSM 20162 chromosome, complete genometranscriptional regulator, TetR family6e-0650.4
NC_012560:5276000:528147152814715282031561Azotobacter vinelandii DJ, complete genomeTranscriptional regulatory protein, TetR family6e-0650.4
NC_021150:5234000:523936352393635239923561Azotobacter vinelandii CA6, complete genomeTranscriptional regulatory protein, TetR family6e-0650.4
NC_011001:63986:830078300783588582Burkholderia cenocepacia J2315 chromosome 2, complete sequenceTetR family regulatory protein9e-0650.1