Pre_GI: BLASTP Hits

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Query: NC_009012:686740:692718 Clostridium thermocellum ATCC 27405, complete genome

Start: 692718, End: 695165, Length: 2448

Host Lineage: Clostridium thermocellum; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a well studied producer of endoglucanase and several restriction endonucleases. Thermophilic cellulose degrading bacterium. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a thermophilic anaerobe that produces an extracellular enzyme system capable of degrading crystalline cellulose to soluble sugars that are further utilized as the carbon source for growth.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021171:1354000:1376781137678113791922412Bacillus sp. 1NLA3E, complete genomeprimosome assembly protein PriA0668
NC_002973:1877905:1877905187790518802982394Listeria monocytogenes str. 4b F2365, complete genomeprimosome assembly protein PriA1e-178627
NC_011660:724711:7432997432997456922394Listeria monocytogenes HCC23 chromosome, complete genomeprimosome assembly protein PriA3e-178625
NC_013768:1983711:1983711198371119861042394Listeria monocytogenes 08-5923, complete genomeprimosome assembly protein PriA2e-177623
NC_002570:2616899:2627969262796926303832415Bacillus halodurans C-125, complete genomeprimosome assembly protein PriA3e-177622
NC_007929:653814:6538146538146561922379Lactobacillus salivarius subsp. salivarius UCC118, complete genomePrimosomal protein n-prim1e-173610
NC_019970:1457794:1458285145828514604802196Thermoanaerobacterium thermosaccharolyticum M0795, complete genomereplication restart DNA helicase PriA4e-173608
NC_008054:1194000:1215595121559512179762382Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completePriA (Primosomal protein N')8e-158558
NC_008609:2840249:2840249284024928424832235Pelobacter propionicus DSM 2379, complete genomeprimosomal protein N'2e-150533
NC_012225:2474042:2474663247466324766481986Brachyspira hyodysenteriae WA1, complete genomeprimosome assembly protein PriA2e-146520
NC_007517:3751107:3751107375110737533472241Geobacter metallireducens GS-15, complete genomePrimosomal protein n1e-145517
NC_014150:1123570:1143693114369311456781986Brachyspira murdochii DSM 12563 chromosome, complete genomeprimosomal protein N'2e-143510
NC_018604:2377549:2383517238351723855111995Brachyspira pilosicoli WesB complete genomeprimosomal protein N9e-143508
NC_019908:2285819:2299847229984723018411995Brachyspira pilosicoli P43/6/78 chromosome, complete genomeprimosomal protein N9e-143508
NC_014734:2285762:2299552229955223020112460Paludibacter propionicigenes WB4 chromosome, complete genomeprimosomal protein n'4e-125449
NC_009615:2674631:2691976269197626944382463Parabacteroides distasonis ATCC 8503 chromosome, complete genomeprimosomal protein N'3e-124446
NC_014934:11341:3733937339397952457Cellulophaga algicola DSM 14237 chromosome, complete genomeprimosomal protein n'9e-124444
NC_013192:2381901:2388078238807823903602283Leptotrichia buccalis DSM 1135, complete genomeprimosomal protein N'8e-123441
NC_015185:1414453:1428266142826614306262361Desulfurobacterium thermolithotrophum DSM 11699 chromosome,primosomal protein N'4e-120432
NC_013222:2795919:2815908281590828184272520Robiginitalea biformata HTCC2501, complete genomeprimosomal protein N'8e-120431
NC_015144:367278:3803403803403827962457Weeksella virosa DSM 16922 chromosome, complete genomeprimosomal protein N'3e-117423
NC_002967:2507993:2512793251279325147751983Treponema denticola ATCC 35405, complete genomeprimosomal protein N'1e-114414
NC_020419:782337:7982717982718002561986Uncultured Termite group 1 bacterium phylotype Rs-D17 DNA, completeprimosomal protein N'5e-113409
NS_000191:782337:7982717982718002561986Uncultured Termite group 1 bacterium phylotype Rs-D17, completeprimosomal protein N'5e-113409
NC_010172:1079127:1096315109631510984922178Methylobacterium extorquens PA1, complete genomeprimosomal protein N'9e-111401
NC_009434:608765:6087656087656111612397Pseudomonas stutzeri A1501, complete genomeprimosome assembly protein PriA8e-110398
NC_015740:636667:6366676366676388892223Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeprimosome assembly protein PriA2e-109397
NC_012808:1220378:1238592123859212407692178Methylobacterium extorquens AM1, complete genomePrimosome factor N' (replication factor Y)6e-109395
NC_011757:748223:7653667653667675432178Methylobacterium chloromethanicum CM4, complete genomeprimosomal protein N'1e-108395
NC_010725:1419272:1436891143689114390682178Methylobacterium populi BJ001, complete genomeprimosomal protein N'9e-108391
NC_002937:1374532:1376876137687613792542379Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completeprimosomal protein n'3e-107390
NC_009952:1984955:2012570201257020147532184Dinoroseobacter shibae DFL 12, complete genomeprimosomal protein N'1e-106387
NC_017080:2893224:2908996290899629114822487Phycisphaera mikurensis NBRC 102666, complete genomeprimosomal protein N'7e-106385
NC_012846:2154000:2170022217002221722292208Bartonella grahamii as4aup, complete genomeprimosome assembly protein PriA7e-104379
NC_008011:213386:2438332438332462112379Lawsonia intracellularis PHE/MN1-00, complete genomePrimosomal protein N' (replication factor Y)-superfamily II helicase7e-104379
NC_010161:2381195:2400865240086524030722208Bartonella tribocorum CIP 105476, complete genomeprimosome assembly protein PriA2e-103377
NC_007645:6096345:6113938611393861161782241Hahella chejuensis KCTC 2396, complete genomeprimosomal protein N'6e-103375
AP010958:4707712:4722601472260147247992199Escherichia coli O103:H2 str. 12009 DNA, complete genomeprimosome factor n'3e-102373
NC_013353:4707712:4722601472260147247992199Escherichia coli O103:H2 str. 12009, complete genomeprimosome factor n'3e-102373
NC_008783:119758:1218551218551240922238Bartonella bacilliformis KC583, complete genomeprimosomal protein N'5e-102372
NC_013209:1969734:1986067198606719883372271Acetobacter pasteurianus IFO 3283-01, complete genomeprimosomal protein N'1e-101371
NC_017100:1972389:1988722198872219909922271Acetobacter pasteurianus IFO 3283-03, complete genomeprimosomal protein N'1e-101371
NC_017108:1969716:1986049198604919883192271Acetobacter pasteurianus IFO 3283-12, complete genomeprimosomal protein N'1e-101371
NC_017111:1969704:1986037198603719883072271Acetobacter pasteurianus IFO 3283-32, complete genomeprimosomal protein N'1e-101371
NC_017121:1969716:1986049198604919883192271Acetobacter pasteurianus IFO 3283-07, complete genomeprimosomal protein N'1e-101371
NC_017125:1972384:1988717198871719909872271Acetobacter pasteurianus IFO 3283-22, complete genomeprimosomal protein N'1e-101371
NC_017146:1972396:1988729198872919909992271Acetobacter pasteurianus IFO 3283-26, complete genomeprimosomal protein N'1e-101371
NC_017150:1877480:1893813189381318960832271Acetobacter pasteurianus IFO 3283-01-42C, complete genomeprimosomal protein N'1e-101371
NC_007912:3403101:3419376341937634215862211Saccharophagus degradans 2-40, complete genometranscription elongation factor GreA2e-101370
NC_007109:894000:9100349100349119801947Rickettsia felis URRWXCal2, complete genomeprimosome assembly protein PriA2e-100367
NC_013416:386301:3892053892053914452241Aggregatibacter actinomycetemcomitans D11S-1, complete genomeprimosomal protein N'4e-100366
NC_016513:689689:6925986925986947962199Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeprimosomal protein N'4e-99362
NC_012913:2189862:2204207220420722064052199Aggregatibacter aphrophilus NJ8700, complete genomeprimosomal protein N'2e-98360
NC_015850:510837:5324785324785346522175Acidithiobacillus caldus SM-1 chromosome, complete genomeprimosomal protein N'2e-97357
NC_013173:302375:3047213047213070302310Desulfomicrobium baculatum DSM 4028, complete genomeprimosomal protein N'4e-96353
NC_014932:1387818:1406642140664214088612220Bartonella clarridgeiae 73, complete genomeprimosomal replication factor Y3e-95350
NC_014366:2904500:2904551290455129069082358Gamma proteobacterium HdN1, complete genomePrimosomal protein N'3e-95350
NC_019815:679592:6920396920396937001662Candidatus Kinetoplastibacterium crithidii (ex Angomonas deaneiprimosomal protein N' (replication factor Y)1e-93344
NC_010793:794494:7970167970167989561941Orientia tsutsugamushi str. Ikeda, complete genomeprimosomal protein N3e-89330
NC_007205:221539:2322632322632342181956Candidatus Pelagibacter ubique HTCC1062, complete genomeprobable primosomal protein N4e-88326
NC_017192:1841987:1845968184596818478151848Arcobacter sp. L, complete genomeprimosome assembly protein PriA8e-88325
NC_009488:1871912:1874433187443318763731941Orientia tsutsugamushi str. Boryong, complete genomeprimosome assembly protein PriA1e-87324
NC_006833:976010:9760109760109783702361Wolbachia endosymbiont strain TRS of Brugia malayi, completePrimosomal protein N', superfamily II helicase, PriA1e-85318
NC_011978:493800:5077455077455099522208Thermotoga neapolitana DSM 4359, complete genomePrimosomal protein N1e-82308
NC_014935:1999653:2002520200252020044031884Nitratifractor saLSUginis DSM 16511 chromosome, complete genomeprimosomal protein n'1e-78295
NC_009715:1202242:1232514123251412343761863Campylobacter curvus 525.92 chromosome, complete genomeprimosome assembly protein PriA4e-74280
NC_009828:469778:4776614776614798742214Thermotoga lettingae TMO, complete genomeprimosomal protein N'4e-64246
NC_015161:84526:1108271108271131572331Deinococcus proteolyticus MRP chromosome, complete genomeprimosomal protein N'2e-40168
NC_016148:1175999:1179788117978811816081821Thermovirga lienii DSM 17291 chromosome, complete genomereplication restart DNA helicase PriA3e-21104
NC_016799:1343020:1364709136470913667362028Corynebacterium diphtheriae 31A chromosome, complete genomeprimosome assembly protein4e-20100
NC_016790:1259356:1276052127605212780792028Corynebacterium diphtheriae VA01 chromosome, complete genomeprimosome assembly protein4e-20100
NC_016787:1276983:1298673129867313007002028Corynebacterium diphtheriae HC03 chromosome, complete genomeprimosome assembly protein4e-20100
NC_016783:1313008:1333553133355313355802028Corynebacterium diphtheriae INCA 402 chromosome, complete genomeprimosome assembly protein4e-20100
NC_002935:1315019:1335564133556413375912028Corynebacterium diphtheriae NCTC 13129, complete genomeprimosome assembly protein PriA4e-20100
NC_016789:1334514:1355064135506413570912028Corynebacterium diphtheriae PW8 chromosome, complete genomeprimosome assembly protein1e-1999
NC_013799:927300:9478429478429498752034Hydrogenobacter thermophilus TK-6, complete genomeprimosomal protein N'2e-1688.6
NC_017161:927290:9478329478329498652034Hydrogenobacter thermophilus TK-6 chromosome, complete genomehypothetical protein2e-1688.6
NC_013715:1207774:1243039124303912454472409Rothia mucilaginosa DY-18, complete genomeprimosomal protein N' - superfamily II helicase7e-1686.7
NC_014550:1581812:1644671164467116468602190Arthrobacter arilaitensis Re117, complete genomeputative ATP-dependent DNA helicase RecG2e-1275.5
NC_015707:705628:7088727088727117062835Thermotoga thermarum DSM 5069 chromosome, complete genometranscription-repair coupling factor3e-1274.7
NC_019978:91483:1047901047901082723483Halobacteroides halobius DSM 5150, complete genometranscription-repair coupling factor Mfd3e-1274.3
NC_011661:1143787:1158550115855011608892340Dictyoglomus turgidum DSM 6724, complete genomeATP-dependent DNA helicase RecG5e-1273.9
NC_009697:3753527:3758499375849937620053507Clostridium botulinum A str. ATCC 19397 chromosome, completetranscription-repair coupling factor3e-1171.6
NC_009698:3647955:3655609365560936591153507Clostridium botulinum A str. Hall chromosome, complete genometranscription-repair coupling factor3e-1171.6
NC_010516:3845942:3853517385351738570233507Clostridium botulinum B1 str. Okra, complete genometranscription-repair coupling factor2e-1171.6
NC_021064:816000:8316398316398338132175Propionibacterium avidum 44067, complete genomeATP-dependent DNA helicase RecG2e-1171.6
NC_017297:3878540:3883512388351238870183507Clostridium botulinum F str. 230613 chromosome, complete genometranscription-repair coupling factor3e-1171.2
NC_014654:2180994:2198668219866822021623495Halanaerobium sp. 'sapolanicus' chromosome, complete genometranscription-repair coupling factor4e-1170.9
NC_015276:2852010:2862706286270628661163411Marinomonas mediterranea MMB-1 chromosome, complete genometranscription-repair coupling factor8e-1169.7
NC_009828:600349:6278256278256306442820Thermotoga lettingae TMO, complete genomeDEAD/DEAH box helicase domain protein3e-1067.8
NC_017187:387735:3877353877353907222988Arcobacter butzleri ED-1, complete genometranscription-repair coupling factor1e-0965.9
NC_010382:1607013:1607013160701316090792067Lysinibacillus sphaericus C3-41, complete genomeATP-dependent DNA helicase recG2e-0965.1
NC_007484:1823751:1833219183321918366953477Nitrosococcus oceani ATCC 19707, complete genomeTranscription-repair coupling factor2e-0965.1
NC_008710:621822:6547836547836581513369Borrelia turicatae 91E135, complete genometranscription-repair coupling factor3e-0964.7
NC_020291:117983:1179831179831214833501Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometranscription-repair-coupling factor Mfd4e-0963.9
NC_010336:1670000:1682754168275416861733420Francisella philomiragia subsp. philomiragia ATCC 25017, completetranscription-repair coupling factor7e-0963.5
NC_012438:1514376:1528982152898215317982817Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genometranscription-repair-coupling factor (trcf) (ATP-dependent helicase mfd)9e-0963.2
NC_007005:2149275:2166974216697421704263453Pseudomonas syringae pv. syringae B728a, complete genomeTranscription-repair coupling factor1e-0862.8
NC_020453:896458:9094679094679125173051Agromonas oligotrophica S58 DNA, complete genomeputative transcription repair coupling factor1e-0862.4
NC_013009:608515:6274786274786295052028Neorickettsia risticii str. Illinois, complete genomeATP-dependent DNA helicase RecG2e-0862
NC_014532:3967463:3990238399023839923192082Halomonas elongata DSM 2581, complete genomeATP-dependent DNA helicase RecG2e-0862
NC_015964:1389628:1405741140574114091903450Haemophilus parainfluenzae T3T1, complete genometranscription-repair coupling factor2e-0862
NC_007880:877317:8896288896288930533426Francisella tularensis subsp. holarctica, complete genomeTranscription-repair coupling factor,ATP-dependent3e-0861.6
NC_009749:879174:8913898913898948143426Francisella tularensis subsp. holarctica FTA, complete genometranscription-repair coupling factor3e-0861.6
NC_008369:880975:8932858932858967103426Francisella tularensis subsp. holarctica OSU18, complete genometranscription-repair coupling factor TRCF3e-0861.6
NC_010519:1802294:1825819182581918292533435Haemophilus somnus 2336 chromosome, complete genometranscription-repair coupling factor3e-0861.6
NC_008309:1289370:1311475131147513149063432Haemophilus somnus 129PT, complete genometranscription-repair coupling factor2e-0861.6
NC_007798:586500:6096466096466116732028Neorickettsia sennetsu str. Miyayama, complete genomeATP-dependent DNA helicase RecG2e-0861.6
NC_008601:1094041:1094041109404110974663426Francisella tularensis subsp. novicida U112, complete genometranscription-repair coupling factor3e-0861.2
NC_005070:1144777:1167825116782511714033579Synechococcus sp. WH 8102, complete genomeTranscriptional-repair coupling factor3e-0861.2
NC_011899:2286884:2307650230765023111623513Halothermothrix orenii H 168, complete genometranscription-repair coupling factor3e-0861.2
NC_006570:650291:6630356630356664603426Francisella tularensis subsp. tularensis Schu 4, complete genomeTranscription-repair coupling factor,ATP-dependent4e-0860.8
NC_008245:650243:6629876629876664123426Francisella tularensis subsp. tularensis FSC 198, complete genomeTranscription-repair coupling factor,ATP-dependent4e-0860.8
NC_016933:726197:7389417389417423663426Francisella tularensis TIGB03 chromosome, complete genometranscription-repair coupling factor4e-0860.8
NC_016937:650290:6630346630346664593426Francisella tularensis subsp. tularensis TI0902 chromosome,transcription-repair coupling factor4e-0860.8
NC_013416:668152:6915106915106950313522Aggregatibacter actinomycetemcomitans D11S-1, complete genometranscription-repair coupling factor4e-0860.8
NC_019896:577594:5814415814415828321392Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeATP-dependent helicase ComFA4e-0860.8
NC_009257:1023696:1023696102369610271213426Francisella tularensis subsp. tularensis WY96-3418 chromosome,transcription-repair coupling factor4e-0860.8
NC_008054:1194000:1195446119544611974852040Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completeATP-dependent DNA helicase RecG3e-0860.8
NC_007513:1126914:1140587114058711441653579Synechococcus sp. CC9902, complete genomeTranscription-repair coupling factor6e-0860.5
NC_014501:5471984:5472550547255054760593510Cyanothece sp. PCC 7822 chromosome, complete genometranscription-repair coupling factor5e-0860.5
NC_010677:1296000:1296025129602512994503426Francisella tularensis subsp. mediasiatica FSC147, complete genometranscription-repair coupling factor5e-0860.5
NC_008344:49039:1246181246181280823465Nitrosomonas eutropha C91, complete genometranscription-repair coupling factor7e-0860.1
NC_005071:835005:8464508464508500313582Prochlorococcus marinus str. MIT 9313, complete genomeTranscriptional-repair coupling factor8e-0860.1
NC_009050:604950:6247126247126278913180Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceDEAD/DEAH box helicase domain protein9e-0859.7
NC_016513:974402:99833199833110017893459Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completetranscription-repair coupling factor9e-0859.7
NC_004193:1558551:1563631156363115656612031Oceanobacillus iheyensis HTE831, complete genomeATP-dependent DNA helicase1e-0759.3
NC_016641:1639356:1640717164071716442443528Paenibacillus terrae HPL-003 chromosome, complete genometranscription-repair coupling factor1e-0758.9
NC_012913:167034:1883251883251917803456Aggregatibacter aphrophilus NJ8700, complete genometranscription-repair coupling factor2e-0758.9
NC_009633:168266:1760431760431795673525Alkaliphilus metalliredigens QYMF chromosome, complete genometranscription-repair coupling factor3e-0758.2
NC_017195:3426000:3441085344108534424761392Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completeComF operon protein 13e-0757.8
NC_015573:162000:1798521798521833913540Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genometranscription-repair coupling factor4e-0757.4
NC_009664:1195630:1195630119563011992113582Kineococcus radiotolerans SRS30216, complete genometranscription-repair coupling factor4e-0757.4
NC_014483:39729:4216142161456883528Paenibacillus polymyxa E681 chromosome, complete genomeTranscription-repair coupling factor (TRCF)4e-0757.4
NC_014624:3538094:3538094353809435415163423Eubacterium limosum KIST612 chromosome, complete genometranscription-repair coupling factor5e-0757
NC_008340:2034810:2056294205629420597943501Alkalilimnicola ehrlichei MLHE-1, complete genometranscription-repair coupling factor7e-0756.6
NC_019897:128610:1704321704321725402109Thermobacillus composti KWC4 chromosome, complete genomesuperfamily II DNA/RNA helicase required for DNA uptake (late competence protein)1e-0656.2
NC_006448:5046:5046504685523507Streptococcus thermophilus LMG 18311, complete genometranscription repair coupling factor2e-0655.5
NC_006449:5046:5046504685523507Streptococcus thermophilus CNRZ1066, complete genometranscription repair coupling factor2e-0655.5
NC_018748:1916012:1935482193548219388233342Emticicia oligotrophica DSM 17448 chromosome, complete genometranscription-repair coupling factor2e-0655.1
NC_014364:2717865:2717865271786527212513387Spirochaeta smaragdinae DSM 11293 chromosome, complete genometranscription-repair coupling factor2e-0655.1
NC_016043:471719:4887394887394922153477Taylorella asinigenitalis MCE3 chromosome, complete genometranscription-repair coupling factor4e-0654.3
NC_000117:845141:8697538697538729923240Chlamydia trachomatis D/UW-3/CX, complete genomeTranscription-Repair Coupling4e-0654.3
CP002516:44744:7291072910749912082Escherichia coli KO11, complete genomeATP-dependent DNA helicase RecG3e-0654.3
NC_016902:44744:7291072910749912082Escherichia coli KO11FL chromosome, complete genomeATP-dependent DNA helicase RecG3e-0654.3
NC_020064:4751097:4774514477451447765952082Serratia marcescens FGI94, complete genomeATP-dependent DNA helicase RecG3e-0654.3
NC_009465:938378:9629629629629663993438Candidatus Vesicomyosocius okutanii HA, complete genometranscription-repair coupling factor5e-0653.9
NC_009922:2850320:2866394286639428699183525Alkaliphilus oremlandii OhILAs, complete genometranscription-repair coupling factor5e-0653.9
NC_011094:3778000:3822043382204338241242082Salmonella enterica subsp. enterica serovar Schwarzengrund strATP-dependent DNA helicase RecG6e-0653.5
NC_015572:1974000:1988163198816319916093447Methylomonas methanica MC09 chromosome, complete genometranscription-repair coupling factor7e-0653.5
NC_010468:49074:6448264482665632082Escherichia coli ATCC 8739, complete genomeATP-dependent DNA helicase RecG7e-0653.1
NC_004337:3590323:3795526379552637976072082Shigella flexneri 2a str. 301, complete genomeDNA helicase8e-0653.1
NC_018664:1729794:1744528174452817465882061Clostridium acidurici 9a chromosome, complete genomeATP-dependent DNA helicase RecG9e-0653.1