Pre_GI: BLASTP Hits

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Query: NC_007953:1434705:1439954 Burkholderia xenovorans LB400 chromosome 3, complete sequence

Start: 1439954, End: 1441288, Length: 1335

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011149:4677412:4692627469262746939551329Salmonella enterica subsp. enterica serovar Agona str. SL483,protein HipA3e-158558
NC_009838:81913:8633986339876641326Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequenceputative capsule biosynthesis protein6e-158557
NC_020181:3328844:3334219333421933357331515Enterobacter aerogenes EA1509E, complete genomeHipA protein1e-156553
NC_017075:1:1110611106124491344Rubrivivax gelatinosus IL144, complete genomeHipA N-terminal domain-containing protein2e-120432
NC_014973:4174668:4178934417893441802501317Geobacter sp. M18 chromosome, complete genomeHipA N-terminal domain-containing protein3e-116419
NC_015567:547500:5554965554965567941299Serratia sp. AS9 chromosome, complete genomeHipA N-terminal domain-containing protein2e-111402
NC_015566:547387:5553105553105566081299Serratia sp. AS12 chromosome, complete genomeHipA N-terminal domain-containing protein2e-111402
NC_015563:4583906:4597729459772945990361308Delftia sp. Cs1-4 chromosome, complete genomeHipA N-terminal domain-containing protein3e-104379
NC_015138:5046921:5051982505198250533041323Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeHipA N-terminal domain-containing protein5e-103374
NC_007954:334795:3419373419373432441308Shewanella denitrificans OS217, complete genomeHipA-like protein7e-100364
NC_014965:997344:1023026102302610243541329Vibrio vulnificus MO6-24/O chromosome I, complete sequenceHipA protein9e-96350
NC_004459:2025436:2039667203966720409951329Vibrio vulnificus CMCP6 chromosome I, complete sequenceHipA-like protein2e-95349
NC_021066:1393750:1414359141435914156901332Raoultella ornithinolytica B6, complete genomepersistence to inhibition of murein or DNA biosynthesis, DNA-binding regulator1e-88327
NC_020063:2230000:2255666225566622569791314Enterobacteriaceae bacterium strain FGI 57, complete genomeHipA domain-containing protein1e-88327
NC_010468:2345781:2351690235169023530121323Escherichia coli ATCC 8739, complete genomeHipA N-terminal domain protein6e-85315
NC_010473:1661000:1678503167850316798251323Escherichia coli str. K-12 substr. DH10B, complete genomeregulator with hipB6e-85315
AC_000091:1574000:1592568159256815938901323Escherichia coli W3110 DNA, complete genomeregulator with hipB6e-85315
NC_000913:1570431:1588878158887815902001323Escherichia coli K12, complete genomeregulator with hipB6e-85315
NC_009800:1589000:1607677160767716089991323Escherichia coli HS, complete genomeprotein HipA6e-85315
NC_012759:1462490:1480937148093714822591323Escherichia coli BW2952 chromosome, complete genomeregulator with hipB6e-85315
NC_012947:2228235:2232110223211022334321323Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeHipA N-terminal domain protein6e-85315
NC_012967:1546000:1567421156742115687431323Escherichia coli B str. REL606 chromosome, complete genomeregulator with hipB6e-85315
NC_016902:2395578:2401473240147324027951323Escherichia coli KO11FL chromosome, complete genomeHipA N-terminal domain-containing protein1e-84313
CP002516:2395578:2401473240147324027951323Escherichia coli KO11, complete genomeHipA N-terminal domain protein1e-84313
CP002185:1681327:1703053170305317043751323Escherichia coli W, complete genomeregulator with HipB1e-84313
NC_011741:1579375:1601102160110216024241323Escherichia coli IAI1 chromosome, complete genomeregulator with hipB5e-84311
CU928160:1579375:1601102160110216024241323Escherichia coli IAI1 chromosome, complete genomeregulator with hipB5e-84311
CP002797:1591000:1604080160408016053811302Escherichia coli NA114, complete genomeHipA protein2e-83310
NC_011742:1574036:1591112159111215924341323Escherichia coli S88 chromosome, complete genomeregulator with hipB6e-83308
NC_007384:1696831:1696831169683116981521322Shigella sonnei Ss046, complete genome2e-75283
NC_002655:1966464:1972050197205019730721023Escherichia coli O157:H7 EDL933, complete genomepersistence to inhibition of murein or DNA biosynthesis, DNA-binding regulator7e-60231
NC_012668:2258854:2281544228154422828631320Vibrio cholerae MJ-1236 chromosome 1, complete sequenceHipA protein1e-55217
NC_012668:1623350:1644773164477316460921320Vibrio cholerae MJ-1236 chromosome 1, complete sequenceHipA protein1e-55217
NC_012668:160357:1663781663781676971320Vibrio cholerae MJ-1236 chromosome 1, complete sequenceHipA protein1e-55217
NC_015633:2565753:2582282258228225836011320Vibrio anguillarum 775 chromosome chromosome I, complete sequenceHipA4e-55215
NC_012811:227541:2275412275412288871347Methylobacterium extorquens AM1 megaplasmid, complete sequenceHipA-like protein5e-49195
NC_010677:1296000:1308129130812913094871359Francisella tularensis subsp. mediasiatica FSC147, complete genometranscription regulator2e-47189
NC_011750:1849561:186943618694361870125690Escherichia coli IAI39 chromosome, complete genome4e-45182
NC_014550:3534000:3534949353494935362351287Arthrobacter arilaitensis Re117, complete genomeHipA-like protein1e-41171
NC_013714:2086526:2137627213762721389281302Bifidobacterium dentium Bd1, complete genomeHipA protein7e-40165
NC_017219:2292040:2296205229620522975601356Bifidobacterium longum subsp. infantis ATCC 15697, complete genomehypothetical protein3e-38159
NC_011593:2288993:2296387229638722977421356Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,HipA domain-containing protein3e-38159
NC_018000:2964500:2964960296496029662281269Sinorhizobium fredii USDA 257 chromosome, complete genomekinase Y4mE8e-36151
NC_012918:356019:3612303612303624741245Geobacter sp. M21 chromosome, complete genomeHipA N-terminal domain-containing protein2e-35150
NC_014830:1602198:1611681161168116129581278Intrasporangium calvum DSM 43043 chromosome, complete genomeHipA N-terminal domain protein2e-33143
NC_014246:876000:8813418813418828461506Mobiluncus curtisii ATCC 43063 chromosome, complete genomeputative transcriptional regulator8e-33141
NC_013172:3093467:3093467309346730947021236Brachybacterium faecium DSM 4810, complete genomeHipA domain-containing protein2e-32140
NC_015850:736680:7505247505247517771254Acidithiobacillus caldus SM-1 chromosome, complete genomeprotein HipA1e-32140
NC_020304:752012:7586387586387598941257Desulfocapsa sulfexigens DSM 10523, complete genomeHipA domain-containing protein1e-30134
NC_011916:467106:4975844975844988551272Caulobacter crescentus NA1000 chromosome, complete genomeprotein hipA1e-29131
NC_009648:5119271:513174551317455132260516Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein5e-29129
NC_010658:1593137:160889416088941609424531Shigella boydii CDC 3083-94, complete genomeprotein HipA5e-26119
NC_008278:256427:2701312701312714291299Frankia alni ACN14a, complete genomeputative HipA protein.2e-24113
NC_009832:622969:630242630242630592351Serratia proteamaculans 568, complete genomehypothetical protein4e-22106
NC_008253:1534840:155134915513491552221873Escherichia coli 536, complete genomehypothetical protein HipA2e-21103
NC_002696:2941644:2951498295149829528321335Caulobacter crescentus CB15, complete genomehypothetical protein3e-20100
NC_011916:2967624:2977478297747829788121335Caulobacter crescentus NA1000 chromosome, complete genomehipA-like phosphatidylinositol 3/4-kinase3e-20100
NC_008322:641197:6499886499886512591272Shewanella sp. MR-7, complete genomeHipA domain protein3e-1997.1
NC_012792:627500:6376566376566390261371Variovorax paradoxus S110 chromosome 2, complete genomeHipA N-terminal domain protein1e-1894.7
NC_015635:3542125:3555796355579635569981203Microlunatus phosphovorus NM-1, complete genomehypothetical protein2e-1894.4
NC_004347:718091:7233087233087246091302Shewanella oneidensis MR-1, complete genomehypothetical protein2e-1894
NC_009663:1656804:1660691166069116619771287Sulfurovum sp. NBC37-1, complete genomehypothetical protein4e-1893.2
NC_009092:521519:5361395361395374401302Shewanella loihica PV-4, complete genomeHipA domain protein5e-1892.8
NC_014151:3797861:3803799380379938050371239Cellulomonas flavigena DSM 20109 chromosome, complete genomeHipA N-terminal domain protein2e-1377.4
NC_014323:4665610:4695226469522646965451320Herbaspirillum seropedicae SmR1 chromosome, complete genomeHipA domain-containing protein5e-1376.3
NC_012586:897148:8971488971488984041257Rhizobium sp. NGR234 plasmid pNGR234b, complete sequenceHipA-like protein3e-1273.6
NC_014355:1461355:1478780147878014799851206Candidatus Nitrospira defluvii, complete genomeputative serine kinase HipA2e-1171.2
NC_014216:3003347:3003347300334730045641218Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomeHipA N-terminal domain protein1e-1068.6
NC_009614:4565620:456562045656204566549930Bacteroides vulgatus ATCC 8482 chromosome, complete genomehypothetical protein4e-0963.2
NC_014006:2932959:2937186293718629390391854Sphingobium japonicum UT26S chromosome 1, complete genomehypothetical protein4e-0963.2
NC_017517:1807072:1820414182041418217031290Neisseria meningitidis M01-240355 chromosome, complete genomehipA family protein1e-0758.5
NC_017514:446616:4906874906874919761290Neisseria meningitidis M01-240149 chromosome, complete genomehipA family protein1e-0758.5
NC_017518:1843705:1859343185934318605961254Neisseria meningitidis NZ-05/33 chromosome, complete genomehipA family protein1e-0758.5