Pre_GI Gene

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Host: NC_009092 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009092:521519 Shewanella loihica PV-4, complete genome

Host Lineage: Shewanella loihica; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain is an environmental isolate from the Naha Vents, Hawaii, in the Pacific Ocean. Psychrotolerant bacterium. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. Shewanella loihica is a psychrotolerant deep sea bacterium. This organism is able to reduce iron, manganese and uranium and may be useful for bioremediation at low temperatures.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
5215195245933075acriflavin resistance proteinQuickGO ontologyBLASTP
5245975256791083efflux transporter RND family MFP subunitQuickGO ontologyBLASTP
525876526820945transcriptional regulator LysR familyQuickGO ontologyBLASTP
526823527494672pentapeptide repeat proteinQuickGO ontologyBLASTP
5275115288781368MATE efflux family proteinQuickGO ontologyBLASTP
529106529396291chaperonin Cpn10QuickGO ontologyBLASTP
5294535311021650chaperonin GroELQuickGO ontologyBLASTP
531629532156528hypothetical protein
532153532500348hypothetical proteinBLASTP
5324875336531167hypothetical proteinBLASTP
533870534667798protein of unknown function DUF88QuickGO ontologyBLASTP
534699535280582hypothetical protein
535900536136237transcriptional regulator XRE familyQuickGO ontologyBLASTP
5361395374401302HipA domain proteinQuickGO ontologyBLASTP
5375105385681059Sel1 domain protein repeat-containing proteinQuickGO ontology
538703539107405hypothetical proteinBLASTP
5393975405631167hypothetical proteinBLASTP
540566541378813hypothetical protein
5415005427711272hypothetical protein
542808543425618cold-shock DNA-binding domain proteinQuickGO ontologyBLASTP
5435185445341017permeaseQuickGO ontologyBLASTP
544562544810249redox-active disulfide protein 2QuickGO ontologyBLASTP
544821545225405transcriptional regulator ArsR familyQuickGO ontologyBLASTP
545503545931429hypothetical protein