Pre_GI: BLASTP Hits

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Query: NC_007613:4156841:4156841 Shigella boydii Sb227, complete genome

Start: 4156841, End: 4158751, Length: 1911

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009800:4332229:4332229433222943342802052Escherichia coli HS, complete genomemultidrug resistance protein MdtO01257
CP002185:4566150:4566150456615045682012052Escherichia coli W, complete genomepredicted outer membrane factor of efflux pump01256
NC_013364:5040268:5040268504026850423192052Escherichia coli O111:H- str. 11128, complete genomeputative multidrug efflux system component01249
NC_007509:3668:3972439724418502127Burkholderia sp. 383 chromosome 3, complete sequenceFusaric acid resistance protein2e-85317
NC_010634:4001154:4017524401752440194251902Yersinia pseudotuberculosis PB1/+, complete genomefusaric acid resistance protein region3e-35150
NC_010465:660207:6602076602076621081902Yersinia pseudotuberculosis YPIII, complete genomeFusaric acid resistance protein conserved region3e-35150
NC_009708:633054:6330546330546349551902Yersinia pseudotuberculosis IP 31758 chromosome, complete genomefusaric acid resistance domain-containing protein3e-35150
NC_006155:4062000:4077291407729140791921902Yersinia pseudotuberculosis IP 32953, complete genomepossible PET family efflux transporter9e-35149
NC_003143:675622:6799336799336817021770Yersinia pestis CO92, complete genomehypothetical protein8e-35149
NC_005810:3272765:3272765327276532745851821Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein8e-35149
NC_008149:587689:5914675914675933681902Yersinia pestis Nepal516, complete genomemembrane protein7e-35149
NC_004088:3923804:3938705393870539406061902Yersinia pestis KIM, complete genomehypothetical protein7e-35149
NC_008150:3495851:3511606351160635135071902Yersinia pestis Antiqua, complete genomehypothetical protein7e-35149
NC_009381:460358:4618894618894637901902Yersinia pestis Pestoides F chromosome, complete genomemembrane protein7e-35149
NC_014029:729675:7334537334537353541902Yersinia pestis Z176003 chromosome, complete genomehypothetical protein7e-35149
NC_017154:671816:6755946755946774951902Yersinia pestis D106004 chromosome, complete genomehypothetical protein7e-35149
NC_017160:676249:6777796777796796801902Yersinia pestis D182038 chromosome, complete genomehypothetical protein7e-35149
NC_017265:3790750:3804066380406638059671902Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein7e-35149
NC_007511:1147696:1181039118103911833602322Burkholderia sp. 383 chromosome 2, complete sequencemembrane protein-like3e-30134
NC_010515:2691000:2722322272232227243882067Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencefusaric acid resistance protein conserved region3e-30133
NC_015376:2010009:2036959203695920391482190Burkholderia gladioli BSR3 chromosome chromosome 2, completefusaric acid resistance protein region4e-29130