Pre_GI: BLASTP Hits

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Query: NC_007613:2699500:2709408 Shigella boydii Sb227, complete genome

Start: 2709408, End: 2710055, Length: 648

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013361:3823347:383520938352093836033825Escherichia coli O26:H11 str. 11368 chromosome, complete genomeantiterminator2e-117421
NC_011745:3197584:320944732094473210328882Escherichia coli ED1a chromosome, complete genomeputative transcription antiterminator3e-110397
NC_011742:3057444:306899030689903069871882Escherichia coli S88 chromosome, complete genometranscription antiterminator3e-110397
NC_008253:2965573:297730929773092978133825Escherichia coli 536, complete genomeputative transcriptional antiterminator protein2e-109394
NC_010498:3023442:303530630353063036130825Escherichia coli SMS-3-5, complete genomeputative transcriptional antiterminator1e-108391
NC_007946:3125577:313712331371233137992870Escherichia coli UTI89, complete genomeantiterminator7e-107386
NC_016641:373623:402726402726403562837Paenibacillus terrae HPL-003 chromosome, complete genometranscription antiterminator LicT4e-29127
NC_006582:3949832:395328839532883954115828Bacillus clausii KSM-K16, complete genometranscriptional antiterminator, BglG family2e-27122
NC_006270:4014000:403209640320964032929834Bacillus licheniformis ATCC 14580, complete genometranscriptional antiterminator8e-26117
NC_020291:1045058:106055510605551061400846Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometranscription antiterminator1e-25115
NC_002570:832480:845788845788846546759Bacillus halodurans C-125, complete genometranscription antiterminator (BigG family)2e-25115
NC_012917:833721:864129864129865064936Pectobacterium carotovorum subsp. carotovorum PC1, complete genometranscriptional antiterminator, BglG6e-25114
NC_019842:3755275:375756437575643758391828Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,LicT7e-25114
NC_012917:2786283:280111228011122801975864Pectobacterium carotovorum subsp. carotovorum PC1, complete genometranscriptional antiterminator, BglG7e-25113
NC_014479:3825195:382519538251953826028834Bacillus subtilis subsp. spizizenii str. W23 chromosome, completetranscriptional antiterminator (BglG family) protein1e-24113
NC_004547:913553:948918948918949769852Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative beta-glucoside operon antiterminator2e-24112
NC_014622:1514416:153176415317641532597834Paenibacillus polymyxa SC2 chromosome, complete genomebglg family transcriptional antiterminator1e-23110
NC_015555:1989463:199786819978681998704837Thermoanaerobacterium xylanolyticum LX-11 chromosome, completetranscriptional antiterminator, BglG1e-23110
NC_013421:1038500:104986410498641050805942Pectobacterium wasabiae WPP163, complete genometranscriptional antiterminator, BglG9e-24110
NC_013421:2972269:300172530017253002588864Pectobacterium wasabiae WPP163, complete genometranscriptional antiterminator, BglG1e-23109
NC_016641:3272500:329680632968063297744939Paenibacillus terrae HPL-003 chromosome, complete genomeBigG family transcription antiterminator2e-23108
NC_016641:3173250:319145331914533192286834Paenibacillus terrae HPL-003 chromosome, complete genomebglg family transcriptional antiterminator2e-23108
NC_012880:1613485:161539716153971616227831Dickeya dadantii Ech703, complete genometranscriptional antiterminator, BglG2e-23108
NC_017316:203233:221668221668222438771Enterococcus faecalis OG1RF chromosome, complete genometranscription antiterminator LicT3e-23108
NC_019970:2263427:226979822697982270622825Thermoanaerobacterium thermosaccharolyticum M0795, complete genometranscriptional antiterminator6e-23107
NC_020063:3104000:311114431111443111986843Enterobacteriaceae bacterium strain FGI 57, complete genometranscriptional antiterminator6e-23107
NC_015601:1463500:146531814653181466166849Erysipelothrix rhusiopathiae str. Fujisawa, complete genometranscriptional antiterminator, BglG3e-22105
NC_014410:615992:637397637397638224828Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,transcriptional antiterminator, BglG5e-22104
NC_011283:2627050:264696026469602647793834Klebsiella pneumoniae 342 chromosome, complete genometranscriptional antiterminator8e-21100
NC_013850:2624899:264385626438562644689834Klebsiella variicola At-22 chromosome, complete genometranscriptional antiterminator, BglG8e-21100
NC_020207:1346579:138583113858311386568738Enterococcus faecium NRRL B-2354, complete genomeBeta-glucoside bgl operon antiterminator, BglG family1e-2099.8
NC_008800:2298000:230718223071822308015834Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,beta-glucoside operon antiterminator1e-2099.8
NC_021182:2921000:294752729475272948363837Clostridium pasteurianum BC1, complete genometranscriptional antiterminator2e-2099.4
NC_012563:811993:826616826616827455840Clostridium botulinum A2 str. Kyoto, complete genometranscriptional antiterminator, LicT2e-2099
NC_008541:2119883:212569021256902126520831Arthrobacter sp. FB24 chromosome 1, complete sequencetranscriptional antiterminator, BglG2e-2098.6
NC_012912:844339:858343858343859212870Dickeya zeae Ech1591, complete genometranscriptional antiterminator, BglG4e-2098.2
NC_006270:741731:761197761197762045849Bacillus licheniformis ATCC 14580, complete genometranscriptional antiterminator (BglG family)3e-1995.1
NC_006322:741516:760981760981761829849Bacillus licheniformis ATCC 14580, complete genomehypothetical protein3e-1995.1
NC_015687:1478668:150180815018081502671864Clostridium acetobutylicum DSM 1731 chromosome, complete genomeBglG family transcriptional antiterminator3e-1995.1
NC_012914:2360989:238471723847172385577861Paenibacillus sp. JDR-2, complete genometranscriptional antiterminator, BglG5e-1994.4
NC_021182:1045218:105904110590411059946906Clostridium pasteurianum BC1, complete genometranscriptional antiterminator9e-1993.6
NC_013515:1483471:148532414853241486163840Streptobacillus moniliformis DSM 12112, complete genometranscriptional antiterminator, BglG5e-1891.3
NC_017195:1411936:143385414338541434720867Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completetranscription antiterminator, GlcT6e-1890.9
NC_004337:3590323:384132238413223842143822Shigella flexneri 2a str. 301, complete genomepositive regulation of bgl operon9e-1890.1
NC_014624:2996377:301194630119463012770825Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein2e-1789.4
NC_012470:678661:690018690018690857840Streptococcus equi subsp. zooepidemicus, complete genometranscription antiterminator3e-1788.6
NC_013315:435599:435599435599436435837Clostridium difficile CD196 chromosome, complete genomebeta-glucoside bgl operon transcription antiterminator3e-1788.6
NC_009089:428075:460765460765461601837Clostridium difficile 630, complete genomebeta-glucoside bgl operon transcription antiterminator3e-1788.2
NC_016935:7426389:742849374284937429365873Paenibacillus mucilaginosus 3016 chromosome, complete genometranscriptional antiterminator BglG6e-1787.4
NC_015690:7334786:733841373384137339285873Paenibacillus mucilaginosus KNP414 chromosome, complete genometranscriptional antiterminator, BglG7e-1787.4
NC_016047:2658000:266550526655052666353849Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completetranscription antiterminator8e-1787
NC_016023:1725294:172529417252941726139846Bacillus coagulans 36D1 chromosome, complete genometranscriptional antiterminator BglG2e-1685.9
NC_014334:1039248:106171910617191062549831Lactobacillus casei str. Zhang chromosome, complete genomebeta-glucoside operon antiterminator6e-1684.3
NC_004668:241352:255938255938256779842Enterococcus faecalis V583, complete genome1e-1583.2
NC_008261:64678:777267772678574849Clostridium perfringens ATCC 13124, complete genometranscription antiterminator5e-1581.3
NC_008262:101731:113027113027113875849Clostridium perfringens SM101, complete genomeSACPA operon antiterminator (sacT)2e-1479
NC_010723:3395187:342819634281963429050855Clostridium botulinum E3 str. Alaska E43, complete genometranscription antiterminator LicT2e-1479
NC_014829:3822125:384634438463443847177834Bacillus cellulosilyticus DSM 2522 chromosome, complete genometranscriptional antiterminator, BglG5e-1374.3
NC_019978:2532640:2552799255279925555342736Halobacteroides halobius DSM 5150, complete genometranscriptional antiterminator9e-0960.5
NC_003909:4854379:4898801489880149004531653Bacillus cereus ATCC 10987, complete genometranscription antiterminator, BglG family3e-0755.5
NC_018265:75658:873328733288168837Melissococcus plutonius DAT561 plasmid 1, complete sequencetranscription antiterminator3e-0755.1
NC_014377:1400544:1412036141203614149962961Thermosediminibacter oceani DSM 16646 chromosome, complete genomePTS system transcriptional activator6e-0754.3
NC_005945:4898841:4926015492601549286902676Bacillus anthracis str. Sterne, complete genometranscription antiterminator, BglG family7e-0753.9
NC_017179:2513804:2528473252847325313972925Clostridium difficile BI1, complete genomesigma-54 interacting transcription antiterminator7e-0753.9
NC_013315:2505792:2520461252046125233852925Clostridium difficile CD196 chromosome, complete genomesigma-54 interacting transcription antiterminator7e-0753.9
NC_013316:2585666:2601017260101726039412925Clostridium difficile R20291, complete genomeputative sigma-54 interacting transcription antiterminator7e-0753.9