Pre_GI: BLASTP Hits

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Query: NC_007607:87000:103259 Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence

Start: 103259, End: 103561, Length: 303

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010660:175200:190143190143190643501Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence2e-37154
NC_017319:192482:205868205868206170303Shigella flexneri 2002017 plasmid pSFxv_1, complete sequencehypothetical protein4e-36149
NC_004851:191709:205985205985206287303Shigella flexneri 2a str. 301 plasmid pCP301, complete sequencehypothetical protein4e-36149
NC_011749:34056:535635356354099537Escherichia coli UMN026 plasmid p1ESCUM, complete sequencenuclease2e-31134
NC_007608:97092:110172110172110633462Shigella boydii Sb227 plasmid pSB4_227, complete sequencehypothetical protein3e-24110
NC_007384:2251792:226888022688802269701822Shigella sonnei Ss046, complete genomemolybdate metabolism regulator, first fragment1e-0962
NC_016822:2341127:235824923582492359070822Shigella sonnei 53G, complete genomehypothetical protein1e-0962
NC_011750:955451:9522129522129554813270Escherichia coli IAI39 chromosome, complete genome5e-0960.1
NC_016822:1839739:184809118480911848417327Shigella sonnei 53G, complete genomeISSfl2 ORF8e-0959.3
NC_008258:4345400:4350843435084343522581416Shigella flexneri 5 str. 8401, complete genome8e-0959.3
NC_007613:4217557:4240173424017342411921020Shigella boydii Sb227, complete genomehypothetical protein4e-0856.6
NC_017328:1835108:184835918483591848667309Shigella flexneri 2002017 chromosome, complete genomehypothetical protein1e-0755.5