Pre_GI: BLASTP Hits

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Query: NC_007606:3784847:3807688 Shigella dysenteriae Sd197, complete genome

Start: 3807688, End: 3808197, Length: 510

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011750:4307166:4329863432986343310261164Escherichia coli IAI39 chromosome, complete genomeputative retron-type reverse transcriptase2e-96350
NC_011601:4036590:406150440615044062463960Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeRNA-directed DNA polymerase1e-91334
NC_020304:3029243:303402230340223034798777Desulfocapsa sulfexigens DSM 10523, complete genomeRetron-type reverse transcriptase2e-31134
NC_012947:2898179:290244829024482903410963Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeRNA-directed DNA polymerase2e-27121
NC_009659:892272:9039629039629049751014Janthinobacterium sp. Marseille chromosome, complete genomeRNA-directed DNA polymerase2e-26118
NC_007347:1:687068707844975Ralstonia eutropha JMP134 chromosome 1, complete sequenceRNA-directed DNA polymerase1e-24112
NC_021066:3201500:321332732133273214196870Raoultella ornithinolytica B6, complete genomehypothetical protein5e-24110
NC_011883:2826000:2832835283283528346191785Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,RNA-directed DNA polymerase9e-24109
NC_015496:3256372:3267584326758432686031020Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genomeRNA-directed DNA polymerase5e-23106
NC_010334:609636:620220620220621074855Shewanella halifaxensis HAW-EB4, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)1e-21102
NC_012691:779826:7885707885707896011032Tolumonas auensis DSM 9187, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)8e-2199.8
NC_007645:6858465:6858465685846568597991335Hahella chejuensis KCTC 2396, complete genomeRetron-type reverse transcriptase1e-1995.9
NC_012108:2159230:217027321702732171157885Desulfobacterium autotrophicum HRM2, complete genomeRNA-directed DNA polymerase (retron-type reverse transcriptase)1e-1995.5
NC_009973:178000:2176542176542194081755Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU01, completeRNA-directed DNA polymerase4e-1994
NC_007086:2887875:2939736293973629409231188Xanthomonas campestris pv. campestris str. 8004, complete genomeRNA-directed DNA polymerase2e-1891.7
NC_008570:2216736:224228322422832243191909Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeputative RNA-dependent DNA polymerase4e-1890.5
NC_020418:2868000:2883180288318028849131734Morganella morganii subsp. morganii KT, complete genomehypothetical protein3e-1787.8
NC_013456:2984491:298688029868802987845966Vibrio sp. Ex25 chromosome 1, complete genomeputative reverse transcriptase5e-1787
NC_015856:3059737:3068580306858030697581179Collimonas fungivorans Ter331 chromosome, complete genomeretron reverse transcriptase6e-1786.7
NC_011206:262844:277816277816278763948Acidithiobacillus ferrooxidans ATCC 53993, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)9e-1786.3
NC_012918:928903:9532789532789544111134Geobacter sp. M21 chromosome, complete genomeRNA-directed DNA polymerase3e-1684.7
NC_016026:2082500:2097240209724020990481809Micavibrio aeruginosavorus ARL-13 chromosome, complete genomereverse transcriptase family protein4e-1684
NC_017191:3901914:3912193391219339139561764Bacillus amyloliquefaciens XH7 chromosome, complete genomeRNA-directed DNA polymerase4e-1684
NC_017188:3900951:3910501391050139122641764Bacillus amyloliquefaciens TA208 chromosome, complete genomeRNA-directed DNA polymerase4e-1684
NC_013194:634039:6422706422706439851716Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeRibonuclease H5e-1683.6
NC_014837:33014:4546245462464751014Pantoea sp. At-9b chromosome, complete genomeRNA-directed DNA polymerase9e-1682.8
NC_002939:1480474:1491977149197714931191143Geobacter sulfurreducens PCA, complete genomeRNA-directed DNA polymerase1e-1582.4
NC_006513:286549:2939752939752958941920Azoarcus sp. EbN1, complete genomeprobable RNA-directed DNA polymerase1e-1582.4
NC_010688:673454:6822916822916839851695Xanthomonas campestris pv. campestris, complete genomeRNA-directed DNA polymerase1e-1582.4
NC_013889:1514799:1529559152955915307431185Thioalkalivibrio sp. K90mix chromosome, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)4e-1580.9
NC_012880:3982383:399147739914773992475999Dickeya dadantii Ech703, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)9e-1579.3
NC_016818:1795576:1804158180415818059991842Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completereverse transcriptase2e-1478.6
NC_013194:1955582:1969326196932619707621437Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completehypothetical protein2e-1478.6
NC_012660:2045398:2084638208463820857861149Pseudomonas fluorescens SBW25 chromosome, complete genomeputative RNA-directed DNA polymerase2e-1478.6
NC_013440:1190832:1204684120468412063901707Haliangium ochraceum DSM 14365, complete genomeRibonuclease H2e-1478.2
NC_013406:303218:3125503125503142201671Paenibacillus sp. Y412MC10 chromosome, complete genomeRNA-directed DNA polymerase2e-1478.2
NC_015976:2900891:291120929112092912144936Sphingobium sp. SYK-6, complete genomeputative RNA-directed DNA polymerase4e-1477.4
NC_010688:3030873:306024630602463061202957Xanthomonas campestris pv. campestris, complete genomeputative reverse transcriptase5e-1477
NC_020260:603796:623334623334624089756Cronobacter sakazakii Sp291, complete genomeRNA-directed DNA polymerase1e-1375.9
NC_007963:1370903:1378303137830313793341032Chromohalobacter salexigens DSM 3043, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)2e-1374.7
NC_015635:5222000:523243052324305233401972Microlunatus phosphovorus NM-1, complete genomeputative RNA-directed DNA polymerase3e-1374.7
NC_014323:3292082:3299680329968033007141035Herbaspirillum seropedicae SmR1 chromosome, complete genomeretron reverse transcriptase7e-1373.2
NC_018012:1789028:180004918000491801002954Thiocystis violascens DSM 198 chromosome, complete genomeRetron-type reverse transcriptase1e-1272.8
NC_002505:2537655:254964225496422550613972Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completeRNA-directed DNA polymerase2e-1272
NC_009457:2095366:210287421028742103845972Vibrio cholerae O395 chromosome 2, complete sequenceRNA-directed DNA polymerase2e-1272
NC_012578:2479150:248665824866582487629972Vibrio cholerae M66-2 chromosome I, complete sequenceRNA-directed DNA polymerase2e-1272
NC_012582:2626786:263429426342942635265972Vibrio cholerae O395 chromosome chromosome I, complete sequenceRNA-directed DNA polymerase2e-1272
NC_012668:1036000:104405310440531045024972Vibrio cholerae MJ-1236 chromosome 1, complete sequencereverse transcriptase2e-1272
NC_016445:2012294:201979920197992020770972Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeRNA-directed DNA polymerase2e-1272
NC_016944:2588435:259596425959642596911948Vibrio cholerae IEC224 chromosome I, complete sequenceRNA-directed DNA polymerase2e-1271.6
NC_002516:776787:785969785969786925957Pseudomonas aeruginosa PAO1, complete genomehypothetical protein2e-1168.9
NC_010334:609636:6242056242056253471143Shewanella halifaxensis HAW-EB4, complete genomeRNA-directed DNA polymerase2e-1168.6
NC_008786:1298817:1309683130968313108311149Verminephrobacter eiseniae EF01-2, complete genomeRNA-directed DNA polymerase4e-1167.4
NC_005139:1784000:1817712181771218188571146Vibrio vulnificus YJ016 chromosome I, complete sequenceretron-type reverse transcriptase4e-1167.4
NC_003911:1078949:109420510942051095173969Silicibacter pomeroyi DSS-3, complete genomeRNA-dependent DNA polymerase, putative7e-1166.6
NC_014910:242845:2767302767302777581029Alicycliphilus denitrificans BC chromosome, complete genomeretron reverse transcriptase8e-1166.2
NC_012880:2778795:278747227874722788422951Dickeya dadantii Ech703, complete genomereverse transcriptase2e-1065.1
NC_008313:2685531:270267527026752703667993Ralstonia eutropha H16 chromosome 1, complete sequencereverse transcriptase (RNA-dependent DNA polymerase)3e-1064.7
NC_004578:4432983:4443121444312144443021182Pseudomonas syringae pv. tomato str. DC3000, complete genomeretron reverse transcriptase3e-1064.7
NC_013961:73037:834488344884434987Erwinia amylovora, complete genomeputative retron reverse transcriptase3e-1064.3
NC_015164:2473496:2477601247760124790611461Bacteroides salanitronis DSM 18170 chromosome, complete genomeRNA-directed DNA polymerase6e-1063.5
NC_013959:83992:922959229593173879Sideroxydans lithotrophicus ES-1 chromosome, complete genomeputative reverse transcriptase6e-1063.5
NC_017075:1674758:169370016937001694443744Rubrivivax gelatinosus IL144, complete genomeputative RNA-directed DNA polymerase1e-0962.8
NC_015510:4674774:4680972468097246832302259Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeRNA-directed DNA polymerase2e-0962
NC_018012:1274500:128271112827111283664954Thiocystis violascens DSM 198 chromosome, complete genomehypothetical protein2e-0962
NC_016620:781995:784689784689785654966Bacteriovorax marinus SJ, complete genomereverse transcriptase2e-0961.6
NC_012125:2826624:284537128453712846330960Salmonella enterica subsp. enterica serovar Paratyphi C strainreverse transcriptase-like protein3e-0961.2
NC_006905:2857699:286350128635012864460960Salmonella enterica subsp. enterica serovar Choleraesuis strreverse transcriptase-like protein3e-0961.2
NC_010501:3987615:4002391400239140035151125Pseudomonas putida W619, complete genomeRNA-directed DNA polymerase (reverse transcriptase)4e-0960.8
NC_014562:983398:997923997923998909987Pantoea vagans C9-1 chromosome, complete genomehypothetical protein7e-0960.1
NC_013421:1505176:151274715127471513718972Pectobacterium wasabiae WPP163, complete genomeretron reverse transcriptase7e-0959.7
NC_008781:1426285:143612114361211436630510Polaromonas naphthalenivorans CJ2, complete genomeretron reverse transcriptase3e-0857.8