Pre_GI: BLASTP Hits

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Query: NC_007384:2007467:2007905 Shigella sonnei Ss046, complete genome

Start: 2007905, End: 2008624, Length: 720

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009801:1392696:141428814142881415007720Escherichia coli E24377A, complete genomeprotein tonB1e-79295
NC_013364:1997891:200214320021432002862720Escherichia coli O111:H- str. 11128, complete genomemembrane spanning protein TonB3e-79295
NC_010473:1384000:139850913985091399228720Escherichia coli str. K-12 substr. DH10B, complete genomemembrane spanning protein in TonB-ExbB-ExbD complex4e-79294
NC_007606:1209132:122019112201911220910720Shigella dysenteriae Sd197, complete genomeTonB8e-78290
NC_011283:2185462:220157322015732202310738Klebsiella pneumoniae 342 chromosome, complete genometransporter1e-36152
NC_013850:2103469:213498421349842135721738Klebsiella variicola At-22 chromosome, complete genomeTonB family protein1e-36152
NC_020063:2011019:201458420145842015315732Enterobacteriaceae bacterium strain FGI 57, complete genomeTonB family protein4e-33141
NC_012779:1629731:164020816402081641059852Edwardsiella ictaluri 93-146, complete genomeprotein TonB1e-23110
NC_007712:2287053:229030522903052291000696Sodalis glossinidius str. 'morsitans', complete genomemembrane protein TonB8e-23107
NC_017168:3290380:329222132922213292868648Yersinia pestis A1122 chromosome, complete genometransporter9e-21100
NC_010465:2282874:228598422859842286754771Yersinia pseudotuberculosis YPIII, complete genomeTonB family protein6e-21100
NC_008150:1705152:174138417413841742142759Yersinia pestis Antiqua, complete genomeTonB protein6e-21100
NC_008149:1842500:187804518780451878803759Yersinia pestis Nepal516, complete genomeTonB protein6e-21100
NC_004088:2227278:224565722456572246415759Yersinia pestis KIM, complete genomeenergy transducer6e-21100
NC_009381:1064227:106669010666901067448759Yersinia pestis Pestoides F chromosome, complete genometransport protein TonB6e-21100
NC_009708:2245586:224869622486962249466771Yersinia pseudotuberculosis IP 31758 chromosome, complete genometransporter6e-21100
NC_014029:2138000:214332421433242144082759Yersinia pestis Z176003 chromosome, complete genomeTonB protein6e-21100
NC_017160:2054289:207091620709162071674759Yersinia pestis D182038 chromosome, complete genomeTonB protein6e-21100
NC_017265:1765399:178455817845581785316759Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,TonB protein6e-21100
NC_008563:1175035:119752211975221197902381Escherichia coli APEC O1, complete genometruncated TonB-like membrane protein encoded within prophage2e-1066.2
NC_008228:3608909:361016836101683610782615Pseudoalteromonas atlantica T6c, complete genomeTonB family protein4e-0961.6
NC_018679:2211000:222962722296272230319693Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, completeTonB family protein2e-0859.7
NC_009092:2902171:290962229096222910239618Shewanella loihica PV-4, complete genomeTonB family protein3e-0858.9
NC_008322:2983951:298767229876722988295624Shewanella sp. MR-7, complete genomeTonB family protein1e-0757
NC_008321:2922000:292384829238482924471624Shewanella sp. MR-4, complete genomeTonB family protein1e-0757
NC_010995:1139867:115670411567041157363660Cellvibrio japonicus Ueda107, complete genomeTonB22e-0756.2
NC_008577:3125675:312748631274863128109624Shewanella sp. ANA-3 chromosome 1, complete sequenceTonB family protein2e-0756.2
NC_014541:1280835:129864812986481299262615Ferrimonas balearica DSM 9799 chromosome, complete genomeouter membrane transport energization protein TonB2e-0755.8
NC_009052:1899954:192276919227691923389621Shewanella baltica OS155, complete genomeTonB family protein4e-0755.5
NC_011663:3181579:318282931828293183449621Shewanella baltica OS223 chromosome, complete genomeTonB family protein5e-0754.7
NC_006138:3355028:336132833613283361987660Desulfotalea psychrophila LSv54, complete genomesimilar to TonB protein7e-0754.3
NC_014315:2659479:267766626776662678319654Nitrosococcus watsoni C-113 chromosome, complete genomeTonB family protein9e-0753.9
NC_014012:3356629:335662933566293357249621Shewanella violacea DSS12, complete genomeTonB2 protein1e-0653.5
NC_013943:1019213:101857510185751019255681Denitrovibrio acetiphilus DSM 12809 chromosome, complete genomeTonB family protein5e-0651.6