Pre_GI Gene

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Host: NC_008228 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008228:3608909 Pseudoalteromonas atlantica T6c, complete genome

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
360890936101681260TPR repeatQuickGO ontologyBLASTP
36101683610782615TonB family proteinQuickGO ontologyBLASTP
36107843611185402Biopolymer transport protein ExbDTolRQuickGO ontologyBLASTP
36111983611722525MotATolQExbB proton channelQuickGO ontologyBLASTP
361172436130761353MotATolQExbB proton channelQuickGO ontologyBLASTP
36130823613846765hypothetical proteinBLASTP
36143653615339975Methyltransferase type 11QuickGO ontologyBLASTP
361594636175921647Tetratricopeptide TPR_2QuickGO ontologyBLASTP
361768236205822901TonB-dependent receptorQuickGO ontologyBLASTP
36210793621345267hypothetical proteinBLASTP
362158636227011116GluLeuPheVal dehydrogenase dimerisation regionQuickGO ontologyBLASTP
36228583623328471transcriptional regulator AsnC familyQuickGO ontologyBLASTP
3623460362454210834-hydroxyphenylpyruvate dioxygenaseQuickGO ontologyBLASTP
362474636263021557transcriptional regulator TyrRQuickGO ontologyBLASTP
36264353627235801phenylalanine-4-hydroxylaseQuickGO ontologyBLASTP