Pre_GI: BLASTP Hits

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Query: NC_007384:16500:26076 Shigella sonnei Ss046, complete genome

Start: 26076, End: 27197, Length: 1122

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:15401:2529625296264171122Shigella sonnei 53G, complete genomehypothetical protein0763
CU928145:11394:2087220872219931122Escherichia coli 55989 chromosome, complete genomefragment of conserved hypothetical protein (partial)0713
NC_011748:11394:2087220872219931122Escherichia coli 55989, complete genome0713
NC_013361:11382:2086820868222891422Escherichia coli O26:H11 str. 11368 chromosome, complete genomeT3SS effector EspX0712
NC_009801:11921:2213822138234601323Escherichia coli E24377A, complete genomehypothetical protein0712
NC_013364:11382:2085220852222731422Escherichia coli O111:H- str. 11128, complete genomeT3SS effector-like protein EspX0711
NC_011415:11381:2085720857222781422Escherichia coli SE11 chromosome, complete genomehypothetical protein0709
NC_013353:12660:2213722137235581422Escherichia coli O103:H2 str. 12009, complete genomeT3SS effector protein EspX0706
AP010958:12660:2213722137235581422Escherichia coli O103:H2 str. 12009 DNA, complete genomeT3SS effector-like protein EspX-homolog0706
NC_011741:11381:2085920859222801422Escherichia coli IAI1 chromosome, complete genomehypothetical protein0706
CU928160:11381:2085920859222801422Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein0706
NC_002655:12000:2333023330247511422Escherichia coli O157:H7 EDL933, complete genomehypothetical protein0690
NC_002695:12000:2332923329247501422Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein0690
NC_011353:12000:2333023330247511422Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein0690
NC_013008:11938:2333023330247511422Escherichia coli O157:H7 str. TW14359 chromosome, complete genomenon-LEE-encoded type III effector0690
NC_013941:12000:2331123311247321422Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein0689
NC_011751:12000:2326823268246891422Escherichia coli UMN026 chromosome, complete genomehypothetical protein0684
NC_011750:12047:2712127121285421422Escherichia coli IAI39 chromosome, complete genomehypothetical protein0679
NC_012967:12161:222082220822912705Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein4e-124444
CP002516:4081484:4088343408834340897641422Escherichia coli KO11, complete genome5e-106384
CP002185:11921:221382213822776639Escherichia coli W, complete genomehypothetical protein1e-105383
NC_009800:12162:222072220722770564Escherichia coli HS, complete genomehypothetical protein2e-96352
NC_009800:12162:228122281223627816Escherichia coli HS, complete genomehypothetical protein1e-78293