Pre_GI: BLASTP Hits

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Query: NC_007333:1743890:1858297 Thermobifida fusca YX, complete genome

Start: 1858297, End: 1859547, Length: 1251

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015434:3507059:3533067353306735343261260Verrucosispora maris AB-18-032 chromosome, complete genomerok family protein7e-58224
NC_007333:1743890:1853339185333918545921254Thermobifida fusca YX, complete genomeputative xylose repressor5e-44179
NC_013526:835117:8411018411018423571257Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeROK family protein2e-30133
NC_014479:1831404:1844341184434118454951155Bacillus subtilis subsp. spizizenii str. W23 chromosome, completenegative transcriptional regulator4e-26119
NC_016047:1978312:1990871199087119920251155Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completexylose repressor1e-25117
NC_020244:1875834:1896395189639518975581164Bacillus subtilis XF-1, complete genomexylose repressor1e-25117
NC_017195:1852935:1871695187169518728491155Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completexylose repressor3e-25116
NC_015953:5865733:5898549589854958997781230Streptomyces sp. SirexAA-E chromosome, complete genomeROK family protein2e-22107
NC_019842:1847081:1859562185956218607161155Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,hypothetical protein5e-22105
NC_009725:1787262:1800029180002918011831155Bacillus amyloliquefaciens FZB42, complete genomeXylR6e-22105
NC_020410:1781884:1797417179741717985711155Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completetranscriptional regulator9e-22105
NC_017191:1568369:1595773159577315969271155Bacillus amyloliquefaciens XH7 chromosome, complete genometranscriptional regulator/sugar kinase2e-21103
NC_017190:1832402:1847161184716118483151155Bacillus amyloliquefaciens LL3 chromosome, complete genomeXylose repressor2e-21103
NC_017188:1567000:1594469159446915956231155Bacillus amyloliquefaciens TA208 chromosome, complete genomenegative transcriptional regulator2e-21103
NC_020272:2077795:2101089210108921022431155Bacillus amyloliquefaciens IT-45, complete genomehypothetical protein7e-21102
NC_012914:5938566:5942383594238359435461164Paenibacillus sp. JDR-2, complete genomeROK family protein4e-21102
NC_000964:1873398:1889720188972018907721053Bacillus subtilis subsp. subtilis str. 168, complete genometranscriptional regulator8e-21101
NC_019896:2158223:2178095217809521791471053Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeXylose repressor2e-20100
NC_018750:6315802:6331621633162163328411221Streptomyces venezuelae ATCC 10712, complete genomeN-acetylmannosamine kinase5e-1995.9
NC_016114:1435436:1441008144100814422401233Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeROK family protein6e-1995.5
NC_021177:6662668:6675017667501766762281212Streptomyces fulvissimus DSM 40593, complete genomeROK family protein1e-1894.4
NC_010572:1748668:1754399175439917555981200Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative ROK-family transcriptional regulator4e-1893.2
NC_015953:5908467:5921153592115359223521200Streptomyces sp. SirexAA-E chromosome, complete genomeROK family protein3e-1893.2
NC_013929:2375613:2383101238310123843121212Streptomyces scabiei 87.22 chromosome, complete genometranscriptional repressor1e-1790.9
NC_003155:2730469:2736105273610527373041200Streptomyces avermitilis MA-4680, complete genomeROK-family transcriptional regulator8e-1788.6
NC_003888:6568000:6588242658824265894531212Streptomyces coelicolor A3(2), complete genomeprobable transcriptional repressor protein9e-1788.6
NC_014829:1154520:1167868116786811690911224Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeROK family protein1e-1688.2
NC_013510:3117837:3117837311783731190631227Thermomonospora curvata DSM 43183, complete genomeROK family protein4e-1686.3
NC_014246:611275:6318586318586331861329Mobiluncus curtisii ATCC 43063 chromosome, complete genometranscriptional repressor3e-1583.6
NC_011898:3973627:3992304399230439935031200Clostridium cellulolyticum H10, complete genomeROK family protein3e-1583.6
NC_010320:143109:1593611593611605631203Thermoanaerobacter sp. X514 chromosome, complete genomeROK family protein4e-1583.2
NC_014538:187747:1992261992262004281203Thermoanaerobacter sp. X513 chromosome, complete genomeROK family protein4e-1583.2
NC_014169:2353711:2355560235556023567651206Bifidobacterium longum subsp. longum JDM301 chromosome, completeROK family protein2e-1377.4
NC_013714:2350749:2355017235501723561891173Bifidobacterium dentium Bd1, complete genomeN-acetylglucosamine repressor2e-1377.4
NC_007644:416000:4239874239874252191233Moorella thermoacetica ATCC 39073, complete genomeROK9e-1375.1
NC_009348:3029963:3033675303367530348891215Aeromonas salmonicida subsp. salmonicida A449, complete genomeN-acetylglucosamine repressor1e-1274.3
NC_016802:1615748:161710116171011618054954Corynebacterium diphtheriae HC02 chromosome, complete genomeglucose kinase2e-1273.9
NC_016785:1586546:161003516100351610988954Corynebacterium diphtheriae CDCE 8392 chromosome, complete genomeglucose kinase2e-1273.9
NC_015875:646000:664115664115665074960Streptococcus pseudopneumoniae IS7493 chromosome, complete genomeglucokinase5e-1272.4
NC_014494:614809:633177633177634136960Streptococcus pneumoniae AP200 chromosome, complete genomehypothetical protein8e-1272
NC_012466:590883:605717605717606676960Streptococcus pneumoniae JJA, complete genomeglucokinase (Glucose kinase)8e-1272
NC_008533:592000:607682607682608641960Streptococcus pneumoniae D39, complete genomeglucokinase8e-1272
NC_010582:620400:633043633043634020978Streptococcus pneumoniae CGSP14, complete genomeglucokinase7e-1272
NC_003098:586941:600133600133601110978Streptococcus pneumoniae R6, complete genomeGlucose kinase7e-1272
NC_014364:2246524:2261433226143322625691137Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeROK family protein1e-1171.2
NC_011899:86800:8898088980901161137Halothermothrix orenii H 168, complete genomeROK family protein2e-1170.5
NC_012785:1988527:200581720058172006761945Kosmotoga olearia TBF 19.5.1, complete genomeROK family protein3e-1170.1
NC_016633:1898234:1903146190314619043481203Sphaerochaeta pleomorpha str. Grapes chromosome, complete genometranscriptional regulator/sugar kinase4e-1169.3
NC_008261:64678:908979089791844948Clostridium perfringens ATCC 13124, complete genomeputative glucokinase6e-1169.3
NC_009828:600349:625474625474626424951Thermotoga lettingae TMO, complete genomeputative glucokinase, ROK family7e-1168.9
NC_019960:1658657:165926016592601660219960Prevotella dentalis DSM 3688 chromosome 1, complete sequencetranscriptional regulator/sugar kinase9e-1168.6
NC_014483:195321:209073209073210023951Paenibacillus polymyxa E681 chromosome, complete genomeGlucokinase (Glucose kinase)9e-1168.6
NC_011899:2481229:2483324248332424845141191Halothermothrix orenii H 168, complete genomeROK family protein1e-1068.2
NC_015703:6295500:6317503631750363187291227Runella slithyformis DSM 19594 chromosome, complete genomeglucokinase1e-1068.2
NC_014815:3790050:3803147380314738043611215Micromonospora sp. L5 chromosome, complete genomerok family protein1e-1067.8
NC_017214:54558:5702657026582521227Bifidobacterium animalis subsp. lactis BB-12 chromosome, completeTranscriptional repressor2e-1067.4
NC_017215:1361822:1364290136429013655161227Bifidobacterium animalis subsp. lactis CNCM I-2494 chromosome,Transcriptional repressor2e-1067.4
NC_016111:5181475:5180324518032451814781155Streptomyces cattleya NRRL 8057, complete genomeglucokinase2e-1067.4
NC_014963:558000:568303568303569238936Terriglobus saanensis SP1PR4 chromosome, complete genomeROK family protein2e-1067.4
NC_017217:1362573:1364948136494813661531206Bifidobacterium animalis subsp. lactis V9 chromosome, completeROK family transcriptional regulator2e-1067
NC_017216:1356930:1359305135930513605101206Bifidobacterium animalis subsp. lactis BLC1, complete genometranscriptional regulator, ROK family protein2e-1067
NC_011835:965977:9683529683529695571206Bifidobacterium animalis subsp. lactis AD011 chromosome, completeRok (NagC/XylR) family transcriptional repressor2e-1067
NC_012815:1357003:1359378135937813605831206Bifidobacterium animalis subsp. lactis DSM 10140, complete genomeROK family transcriptional regulator2e-1067
NC_012814:1357070:1359445135944513606501206Bifidobacterium animalis subsp. lactis Bl-04, complete genomeROK family transcriptional regulator2e-1067
NC_019896:1989997:199384819938481994816969Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completetranscriptional regulator5e-1066.2
NC_015707:705628:713104713104714048945Thermotoga thermarum DSM 5069 chromosome, complete genomeglucokinase4e-1066.2
NC_014219:2509062:252732325273232528294972Bacillus selenitireducens MLS10 chromosome, complete genomeglucokinase, ROK family7e-1065.5
NC_004369:2203947:220484122048412205809969Corynebacterium efficiens YS-314, complete genomeglucose kinase9e-1065.1
NC_012491:743883:746835746835747809975Brevibacillus brevis NBRC 100599, complete genomeglucokinase1e-0965.1
NC_014931:6203872:6243214624321462443711158Variovorax paradoxus EPS chromosome, complete genomeROK family protein1e-0965.1
NC_013739:5705325:5710409571040957116231215Conexibacter woesei DSM 14684, complete genomeROK family protein1e-0964.7
NC_015663:3466471:3481170348117034823421173Enterobacter aerogenes KCTC 2190 chromosome, complete genometranscriptional regulator1e-0964.7
NC_014838:175939:1995041995042006371134Pantoea sp. At-9b plasmid pPAT9B01, complete sequenceROK family protein1e-0964.3
NC_002578:877609:883084883084884058975Thermoplasma acidophilum DSM 1728, complete genomeglucose kinase related protein4e-0962.8
NC_014364:3238374:3248822324882232500601239Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeROK family protein4e-0962.8
NC_014933:3856561:386935538693553870296942Bacteroides helcogenes P 36-108 chromosome, complete genomeROK family protein4e-0962.8
NC_010003:225420:2312382312382324341197Petrotoga mobilis SJ95, complete genomeROK family protein6e-0962.4
NC_015519:801929:806377806377807333957Tepidanaerobacter sp. Re1 chromosome, complete genomeROK family glucokinase7e-0962.4
NC_011661:906583:916539916539917492954Dictyoglomus turgidum DSM 6724, complete genomeN-acylmannosamine kinase8e-0962
NC_014364:2562281:257970525797052580640936Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeROK family protein1e-0861.2
NC_017218:2119964:2130495213049521317931299Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomeROK family protein2e-0860.8
NC_015519:801929:8051658051658063551191Tepidanaerobacter sp. Re1 chromosome, complete genomeglucokinase3e-0860.1
NC_016111:409852:4229474229474240981152Streptomyces cattleya NRRL 8057, complete genomeROK-family transcriptional regulator4e-0859.7
NC_012778:2049694:206003920600392060980942Eubacterium eligens ATCC 27750, complete genomeglucokinase1e-0758.2
NC_014209:136152:149349149349150296948Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,ROK family protein1e-0757.8
NC_010175:1531212:1538807153880715400331227Chloroflexus aurantiacus J-10-fl, complete genomeROK family protein2e-0757.4
NC_013729:2133294:2132068213206821332971230Kribbella flavida DSM 17836, complete genomeROK family protein2e-0757.4
NC_008578:591357:6030256030256040501026Acidothermus cellulolyticus 11B, complete genomeROK family protein2e-0757.4
NC_016109:8256000:8259190825919082605061317Kitasatospora setae KM-6054, complete genomeputative NagC family transcriptional regulator2e-0757
NC_020134:301500:318375318375319337963Clostridium stercorarium subsp. stercorarium DSM 8532, completeglucokinase GlcK3e-0757
NC_013093:2547608:2555558255555825567271170Actinosynnema mirum DSM 43827, complete genomeROK family protein4e-0756.2
NC_012491:6143928:615641561564156157413999Brevibacillus brevis NBRC 100599, complete genomeprobable glucokinase4e-0756.2
NC_015671:1540860:156383715638371564781945Cellvibrio gilvus ATCC 13127 chromosome, complete genomeglucokinase, ROK family5e-0755.8
NC_008601:631504:649296649296650243948Francisella tularensis subsp. novicida U112, complete genomeROK family protein5e-0755.8
NC_014410:51711:852268522686173948Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,glucokinase, ROK family8e-0755.5
NC_013235:1938889:1942767194276719439271161Nakamurella multipartita DSM 44233, complete genomeROK family protein7e-0755.5
NC_017265:2213500:2234107223410722352221116Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,transcriptional regulator1e-0655.1
NC_004088:2491303:2512443251244325135971155Yersinia pestis KIM, complete genometranscriptional regulator1e-0654.7
NC_017168:3433804:3454739345473934558511113Yersinia pestis A1122 chromosome, complete genometranscriptional regulator1e-0654.7
NC_014029:2285323:2306431230643123075431113Yersinia pestis Z176003 chromosome, complete genomeputative transcriptional regulatory protein1e-0654.7
NC_009381:1205900:1226956122695612280681113Yersinia pestis Pestoides F chromosome, complete genometranscriptional regulatory protein1e-0654.7
NC_010465:2383219:2404312240431224054241113Yersinia pseudotuberculosis YPIII, complete genomeROK family protein1e-0654.7
NC_010336:213148:236490236490237437948Francisella philomiragia subsp. philomiragia ATCC 25017, completeROK family protein2e-0654.3
NC_011978:975333:999005999005999958954Thermotoga neapolitana DSM 4359, complete genomeGlucokinase2e-0653.9
NC_019970:35985:716787167872625948Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeROK family protein, putative glucokinase2e-0653.9
NC_010321:2207364:221454822145482215495948Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completeROK family glucokinase2e-0653.9
NC_010320:33814:536015360154548948Thermoanaerobacter sp. X514 chromosome, complete genomeROK family glucokinase2e-0653.9
NC_014964:2199252:220169322016932202640948Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completeglucokinase, ROK family2e-0653.9
NC_014538:73272:934669346694413948Thermoanaerobacter sp. X513 chromosome, complete genomeglucokinase, ROK family2e-0653.9
NC_015696:1749863:175568817556881756635948Francisella sp. TX077308 chromosome, complete genomeputative ROK-family transcriptional regulator2e-0653.9
NC_014500:2402881:2403912240391224051291218Dickeya dadantii 3937 chromosome, complete genomeDNA-binding transcriptional repressor3e-0653.5
NC_016751:1299738:131222013122201313164945Marinitoga piezophila KA3 chromosome, complete genometranscriptional regulator/sugar kinase3e-0653.1
NC_015675:1721543:1744359174435917458281470Mesorhizobium opportunistum WSM2075 chromosome, complete genomeROK family protein3e-0653.1
NC_009328:3322802:335427933542793355181903Geobacillus thermodenitrificans NG80-2 chromosome, complete genomesugar kinase5e-0652.8
NC_017295:1228760:125240812524081253286879Clostridium acetobutylicum EA 2018 chromosome, complete genomeTranscriptional regulators of NagC/XylR family7e-0652.4
NC_003030:1231127:125477512547751255653879Clostridium acetobutylicum ATCC 824, complete genomeTranscriptional regulators of NagC/XylR family7e-0652.4
NC_015687:1230948:125459612545961255474879Clostridium acetobutylicum DSM 1731 chromosome, complete genomeNagC/XylR family transcriptional regulator7e-0652.4