Pre_GI: BLASTP Hits

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Query: NC_006856:26438:40607 Salmonella enterica subsp. enterica serovar Choleraesuis str

Start: 40607, End: 41866, Length: 1260

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009651:19909:3544735447367541308Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN5,chloramphenicol resistance protein0701
NC_010410:3606826:3657942365794236592011260Acinetobacter baumannii AYE, complete genomeChloramphenicol resistance protein0700
NC_010410:3606826:3673544367354436747581215Acinetobacter baumannii AYE, complete genomeputative Chloramphenicol and florfenicol resistance protein (CmlA)5e-75281
NC_016445:89500:9814798147993611215Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completechloramphenicol resistance protein4e-74278
NC_012668:3037345:3050224305022430514381215Vibrio cholerae MJ-1236 chromosome 1, complete sequenceflorfenicol/chloramphenicol resistance protein4e-74278
NC_017030:2728175:2731627273162727328141188Corallococcus coralloides DSM 2259 chromosome, complete genomeBcr/CflA family protein drug resistance transporter2e-68259
NC_014228:4360676:4371957437195743731501194Xenorhabdus nematophila ATCC 19061, complete genomeChloramphenicol resistance protein4e-63242
NC_008245:1794629:1813227181322718144171191Francisella tularensis subsp. tularensis FSC 198, complete genomemultidrug resistance protein, membrane located5e-35149
NC_006570:1794832:1813430181343018146201191Francisella tularensis subsp. tularensis Schu 4, complete genomemultidrug resistance protein, membrane located5e-35149
NC_016937:1794651:1813249181324918144301182Francisella tularensis subsp. tularensis TI0902 chromosome,MFS family major facilitator transporter6e-35148
NC_016933:1870558:1889156188915618903371182Francisella tularensis TIGB03 chromosome, complete genomeMFS family major facilitator transporter6e-35148
NC_009257:78291:7989379893810741182Francisella tularensis subsp. tularensis WY96-3418 chromosome,major facilitator superfamily multidrug resistance protein6e-35148
NC_007880:1780702:1799484179948418006651182Francisella tularensis subsp. holarctica, complete genomemultidrug resistance protein, membrane located6e-35148
NC_010677:1784000:1800499180049918016801182Francisella tularensis subsp. mediasiatica FSC147, complete genomedrug:H+ antiporter-1 (DHA1) family protein6e-35148
NC_008369:1780945:1799118179911818002991182Francisella tularensis subsp. holarctica OSU18, complete genomeMFS family major facilitator transporter, probable multidrug resistance protein6e-35148
NC_008601:1811327:1827976182797618291571182Francisella tularensis subsp. novicida U112, complete genomedrug:H+ antiporter-1 (DHA1) family protein5e-34145
NC_015381:2859000:2885137288513728863361200Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein9e-1995.1
NC_010524:4644587:4679798467979846810001203Leptothrix cholodnii SP-6, complete genomedrug resistance transporter, Bcr/CflA subfamily4e-1892.8
NC_013421:2004088:2004088200408820053441257Pectobacterium wasabiae WPP163, complete genomedrug resistance transporter, Bcr/CflA subfamily7e-1892
NC_014166:401815:4181864181864193581173Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeBcr/CflA subfamily drug resistance transporter7e-1789
NC_020211:2985157:2986584298658429877771194Serratia marcescens WW4, complete genomemultidrug efflux system protein1e-1687.8
NC_015164:2859000:2890889289088928920911203Bacteroides salanitronis DSM 18170 chromosome, complete genomedrug resistance transporter, Bcr/CflA subfamily1e-1687.8
NC_012660:3320330:3322717332271733239251209Pseudomonas fluorescens SBW25 chromosome, complete genometransporter2e-1687
NC_020126:10319500:1033460210334602103358281227Myxococcus stipitatus DSM 14675, complete genomeBcr/CflA subfamily drug resistance transporter9e-1685.1
NC_008767:1739344:1739344173934417407231380Neisseria meningitidis FAM18, complete genomeputative integral membrane efflux protein9e-1685.1
NC_007651:1726472:1745758174575817469931236Burkholderia thailandensis E264 chromosome I, complete sequencedrug resistance transporter, Bcr/CflA family1e-1584.3
NC_004369:437594:4375944375944388111218Corynebacterium efficiens YS-314, complete genomeputative transport protein6e-1582.4
NC_017279:29737:5290052900541021203Campylobacter jejuni subsp. jejuni IA3902 chromosome, completeMFS family drug resistance transporter5e-1582.4
NC_007510:973828:9922689922689934851218Burkholderia sp. 383 chromosome 1, complete sequenceDrug resistance transporter Bcr/CflA subfamily8e-1582
NC_002163:29726:5266552665538671203Campylobacter jejuni subsp. jejuni NCTC 11168, complete genomeputative efflux protein1e-1481.6
NC_017281:30261:5093850938521401203Campylobacter jejuni subsp. jejuni S3 chromosome, complete genomePutative efflux protein1e-1480.9
NC_003912:30265:5165651656528581203Campylobacter jejuni RM1221, complete genomedrug resistance transporter, Bcr/CflA family5e-1479.3
NC_012108:1694817:1712072171207217132741203Desulfobacterium autotrophicum HRM2, complete genomedrug resistance transporter (permease of major facilitator superfamily)6e-1479
NC_007645:4356865:4358896435889643600921197Hahella chejuensis KCTC 2396, complete genomePermease of the major facilitator superfamily1e-1377.8
NC_017506:1:2913629136303321197Marinobacter adhaerens HP15 chromosome, complete genomeBcr/CflA family multidrug resistance transporter1e-1377.8
NC_003198:3824187:3847855384785538490391185Salmonella enterica subsp. enterica serovar Typhi str. CT18,multidrug resistance protein D1e-1377.8
NC_004631:3809678:3833345383334538345291185Salmonella enterica subsp. enterica serovar Typhi Ty2, completemultidrug resistance protein D1e-1377.8
NC_010184:3213347:3214033321403332152321200Bacillus weihenstephanensis KBAB4, complete genomedrug resistance transporter, Bcr/CflA subfamily2e-1377
NC_016616:760145:7763977763977775901194Dechlorosoma suillum PS chromosome, complete genomeBcr/CflA subfamily drug resistance transporter3e-1377
NC_013406:3975512:3994353399435339955821230Paenibacillus sp. Y412MC10 chromosome, complete genomeBcr/CflA subfamily drug resistance transporter4e-1376.6
NC_013592:3397304:3405878340587834071401263Dickeya dadantii Ech586, complete genomedrug resistance transporter, Bcr/CflA subfamily4e-1376.3
NC_011274:3799696:3823358382335838245421185Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91multidrug resistance protein D1e-1274.7
NC_015434:1173794:1174755117475511759781224Verrucosispora maris AB-18-032 chromosome, complete genomeBcr/CflA subfamily drug resistance transporter2e-1274.3
NC_014618:1593360:1611633161163316128291197Enterobacter cloacae SCF1 chromosome, complete genomeBcr/CflA subfamily drug resistance transporter2e-1273.9
NC_008268:7052202:7069509706950970706781170Rhodococcus sp. RHA1, complete genomemultidrug resistance transporter, MFS superfamily2e-1273.9
NC_012779:3652737:3670300367030036714841185Edwardsiella ictaluri 93-146, complete genomemultidrug resistance protein D3e-1273.2
NC_016582:9076686:9094413909441390956061194Streptomyces bingchenggensis BCW-1 chromosome, complete genomebicyclomycin resistance protein4e-1272.8
NC_012962:1068102:1069574106957410707971224Photorhabdus asymbiotica, complete genomebicyclomycin resistance protein; transmembrane protein5e-1272.8
NC_018515:3169973:3183519318351931847451227Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeBcr/CflA family multidrug resistance transporter7e-1272
NC_010067:660659:6828886828886840781191Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein8e-1272
NC_012881:1062629:1072105107210510732591155Desulfovibrio salexigens DSM 2638, complete genomedrug resistance transporter, Bcr/CflA subfamily1e-1171.2
NC_008702:4064470:4090917409091740921131197Azoarcus sp. BH72, complete genomeputative bicyclomycin resistance protein1e-1171.2
NC_009648:4497749:4513408451340845145861179Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomemultidrug efflux system protein MdtL3e-1170.1
NC_011147:682897:7073937073937085831191Salmonella enterica subsp. enterica serovar Paratyphi A strbicyclomycin/multidrug efflux system protein4e-1169.3
NC_006511:682863:7074477074477086371191Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCbicyclomycin resistance protein4e-1169.3
NC_012917:1840172:1888014188801418892041191Pectobacterium carotovorum subsp. carotovorum PC1, complete genomedrug resistance transporter, Bcr/CflA subfamily8e-1168.6
NC_004337:3590323:3897624389762438986761053Shigella flexneri 2a str. 301, complete genomemultidrug resistance protein D1e-1068.2
NC_008700:2451798:2451798245179824530031206Shewanella amazonensis SB2B, complete genomebicyclomycin resistance protein2e-1067.8
NC_016816:1545354:1579510157951015806821173Pantoea ananatis LMG 5342, complete genomebicyclomycin resistance protein3e-1067
NC_009053:393700:3978743978743990701197Actinobacillus pleuropneumoniae L20, complete genomebicyclomycin resistance-like protein3e-1066.6
NC_010278:398521:4027044027044039001197Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,bicyclomycin/multidrug efflux system protein3e-1066.6
NC_013943:124500:1292961292961304771182Denitrovibrio acetiphilus DSM 12809 chromosome, complete genomeBcr/CflA subfamily drug resistance transporter3e-1066.6
NC_011080:1470794:1505113150511315063181206Salmonella enterica subsp. enterica serovar Newport str. SL254,inner membrane transport protein YdhC4e-1066.2
NC_005085:786851:7922917922917935111221Chromobacterium violaceum ATCC 12472, complete genomeprobable MFS transporter5e-1065.9
NC_013941:4567820:4567820456782045689951176Escherichia coli O55:H7 str. CB9615 chromosome, complete genomemultidrug resistance protein mdtL6e-1065.9
NC_013592:3212834:3229175322917532303711197Dickeya dadantii Ech586, complete genomedrug resistance transporter, Bcr/CflA subfamily8e-1065.5
NC_004337:3590323:3859193385919338603681176Shigella flexneri 2a str. 301, complete genomeputative transport protein8e-1065.5
NC_011094:1435347:1469587146958714707921206Salmonella enterica subsp. enterica serovar Schwarzengrund strinner membrane transport protein YdhC8e-1065.5
NC_016831:1236786:1271046127104612722511206Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative integral membrane transport protein7e-1065.5
NC_003197:1471349:1505673150567315068781206Salmonella typhimurium LT2, complete genomeputative transport protein7e-1065.5
NC_016856:1481325:1515649151564915168541206Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sinner membrane transport protein YdhC7e-1065.5
NC_016860:1469066:1503360150336015045651206Salmonella enterica subsp. enterica serovar Typhimurium strinner membrane transport protein YdhC7e-1065.5
NC_016863:1429516:1463840146384014650451206Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1inner membrane transport protein YdhC7e-1065.5
NC_020209:1986503:2014270201427020154901221Pseudomonas poae RE*1-1-14, complete genomeBcr/CflA subfamily drug resistance transporter6e-1065.5
NC_011750:4490573:4491953449195344931281176Escherichia coli IAI39 chromosome, complete genomemultidrug efflux system protein MdtL1e-0965.1
NC_010498:4166903:4168283416828341694581176Escherichia coli SMS-3-5, complete genomemultidrug resistance protein MdtL9e-1065.1
NC_011751:4373961:4375341437534143765161176Escherichia coli UMN026 chromosome, complete genomemultidrug efflux system protein MdtL9e-1065.1
NC_009654:4624459:4632435463243546336791245Marinomonas sp. MWYL1, complete genomeBcr/CflA subfamily drug resistance transporter1e-0964.7
NC_002695:4678945:4680324468032446814991176Escherichia coli O157:H7 str. Sakai, complete genomeputative transport protein1e-0964.3
NC_002655:4747926:4749305474930547504801176Escherichia coli O157:H7 EDL933, complete genomeputative transport protein1e-0964.3
NC_011353:4782040:4783419478341947845941176Escherichia coli O157:H7 str. EC4115 chromosome, complete genomemultidrug efflux system protein MdtL1e-0964.3
NC_013008:4738083:4739462473946247406371176Escherichia coli O157:H7 str. TW14359 chromosome, complete genomemultidrug efflux system protein MdtL1e-0964.3
NC_010067:1507823:1509890150989015110951206Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-0964.3
NC_008343:61191:6266662666639041239Granulibacter bethesdensis CGDNIH1, complete genomemultidrug resistance transporter, Bcr family2e-0963.9
NC_006833:449132:4502284502284513941167Wolbachia endosymbiont strain TRS of Brugia malayi, completePermease of the major facilitator superfamily3e-0963.5
NC_005945:754517:7673547673547685351182Bacillus anthracis str. Sterne, complete genomemajor facilitator family transporter4e-0963.2
NC_014228:3442159:3463729346372934649191191Xenorhabdus nematophila ATCC 19061, complete genomeputative drug resistance transporter4e-0963.2
NC_009654:304000:3103693103693115621194Marinomonas sp. MWYL1, complete genomeBcr/CflA subfamily drug resistance transporter9e-0962
NC_006570:24636:2463624636258261191Francisella tularensis subsp. tularensis Schu 4, complete genomehypothetical protein7e-0962
NC_008245:24652:2465224652258421191Francisella tularensis subsp. tularensis FSC 198, complete genomehypothetical protein7e-0962
NC_009257:109528:1095281095281107181191Francisella tularensis subsp. tularensis WY96-3418 chromosome,major facilitator transporter7e-0962
NC_016933:24654:2465424654258441191Francisella tularensis TIGB03 chromosome, complete genomeCflA family7e-0962
NC_016937:24654:2465424654258441191Francisella tularensis subsp. tularensis TI0902 chromosome,CflA family7e-0962
NC_015873:1119500:1135813113581311370151203Megasphaera elsdenii DSM 20460, complete genomeDrug resistance transporter2e-0861.2
NC_013223:1090397:1116488111648811176541167Desulfohalobium retbaense DSM 5692, complete genomedrug resistance transporter, Bcr/CflA subfamily1e-0861.2
NC_010170:4463000:4470620447062044718671248Bordetella petrii, complete genomeputative drug resistance transporter, Bcr/CflA family1e-0861.2
NC_013282:2026083:2074229207422920754041176Cronobacter turicensis, complete genomeInner membrane transport protein ydhC1e-0861.2
NC_020300:1241968:1243103124310312442901188Bartonella australis Aust/NH1, complete genomemultidrug resistance transporter, Bcr/CflA family1e-0861.2
NC_015559:3511231:3515999351599935172371239Marinomonas posidonica IVIA-Po-181 chromosome, complete genomeBcr/CflA subfamily drug resistance transporter1e-0861.2
NC_014840:76232:8778187781889831203Pantoea sp. At-9b plasmid pPAT9B03, complete sequencedrug resistance transporter, Bcr/CflA subfamily2e-0860.8
NC_014733:2851984:1408214082153381257Methylovorus sp. MP688 chromosome, complete genomedrug resistance transporter, bcr/cfla subfamily2e-0860.8
NC_010677:96470:9647096470976601191Francisella tularensis subsp. mediasiatica FSC147, complete genomedrug:H+ antiporter-13e-0860.1
NC_014210:2372813:2381520238152023828331314Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,drug resistance transporter, Bcr/CflA subfamily3e-0860.1
NC_020209:1986503:1989171198917119903671197Pseudomonas poae RE*1-1-14, complete genomeMFS family transporter4e-0859.7
NC_015968:4790239:4792662479266247938371176Enterobacter asburiae LF7a chromosome, complete genomemajor facilitator superfamily protein4e-0859.7
NC_015663:1902344:1916228191622819173671140Enterobacter aerogenes KCTC 2190 chromosome, complete genomemajor facilitator family transporter5e-0859.3
NC_019907:539749:5705425705425717831242Liberibacter crescens BT-1 chromosome, complete genomehypothetical protein9e-0858.5
NC_020301:1342924:1342924134292413441201197Bartonella vinsonii subsp. berkhoffii str. Winnie, complete genomemultidrug resistance transporter, Bcr/CflA family1e-0758.2
NC_020209:2838582:2846079284607928472901212Pseudomonas poae RE*1-1-14, complete genomemajor facilitator family transporter1e-0758.2
NC_010407:151599:1716071716071729201314Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative membrane transport protein1e-0758.2
NC_015563:2702787:2718485271848527197441260Delftia sp. Cs1-4 chromosome, complete genomemajor facilitator superfamily protein1e-0757.8
NC_013715:1886215:1900770190077019020201251Rothia mucilaginosa DY-18, complete genomepermease of the major facilitator superfamily2e-0757.4
NC_012914:3315947:3329590332959033307771188Paenibacillus sp. JDR-2, complete genomemajor facilitator superfamily MFS_15e-0756.2
NC_020064:1150982:1166314116631411675041191Serratia marcescens FGI94, complete genomedrug resistance transporter, Bcr/CflA subfamily5e-0755.8
NC_007799:284058:3063883063883075961209Ehrlichia chaffeensis str. Arkansas, complete genomedrug resistance transporter, Bcr/CflA family5e-0755.8
NC_015563:2702787:2706710270671027079481239Delftia sp. Cs1-4 chromosome, complete genomemajor facilitator superfamily protein6e-0755.8
NC_016629:3308329:3312919331291933140821164Desulfovibrio africanus str. Walvis Bay chromosome, completeBcr/CflA subfamily drug resistance transporter8e-0755.5
NC_021171:4425050:4428134442813444295911458Bacillus sp. 1NLA3E, complete genomePermease of the major facilitator superfamily protein8e-0755.5
NC_006831:1112000:1118597111859711197931197Ehrlichia ruminantium str. Gardel, complete genomeBicyclomycin resistance protein7e-0755.5
NC_006832:1125000:1129104112910411303001197Ehrlichia ruminantium str. Welgevonden, complete genomeBicyclomycin resistance protein7e-0755.5
NC_005295:1146500:1150505115050511517011197Ehrlichia ruminantium str. Welgevonden, complete genomeputative bicyclomycin resistance protein7e-0755.5
NC_011886:2369980:2374379237437923757521374Arthrobacter chlorophenolicus A6, complete genomemajor facilitator superfamily MFS_17e-0755.5
NC_008541:1503835:1503835150383515050581224Arthrobacter sp. FB24 chromosome 1, complete sequencedrug resistance transporter, Bcr/CflA subfamily1e-0655.1
NC_016641:2225779:2242855224285522443241470Paenibacillus terrae HPL-003 chromosome, complete genomePermease of the major facilitator superfamily protein1e-0655.1
NC_008577:1455000:1483912148391214853961485Shewanella sp. ANA-3 chromosome 1, complete sequencemajor facilitator superfamily MFS_11e-0654.7
NC_009488:1430693:1463464146346414646631200Orientia tsutsugamushi str. Boryong, complete genomeBcr/CflA subfamily drug resistance transporter2e-0654.3
NC_020210:2969862:2999622299962230008331212Geobacillus sp. GHH01, complete genomemajor facilitator superfamily protein2e-0654.3
NC_012792:310443:3301373301373315851449Variovorax paradoxus S110 chromosome 2, complete genomedrug resistance transporter, EmrB/QacA subfamily2e-0653.9
NC_010170:5087742:5106217510621751076591443Bordetella petrii, complete genomeprobable transport transmembrane protein3e-0653.5
NC_016604:3184855:3188336318833631897961461Mycobacterium rhodesiae NBB3 chromosome, complete genomeEmrB/QacA subfamily drug resistance transporter3e-0653.1
NC_008278:2594387:2594387259438725960001614Frankia alni ACN14a, complete genomePutative transmembrane efflux protein3e-0653.1
NC_014814:169374:1831751831751846351461Mycobacterium sp. Spyr1 chromosome, complete genomedrug resistance transporter, EmrB/QacA subfamily4e-0652.8
NC_009338:630130:6622906622906637501461Mycobacterium gilvum PYR-GCK chromosome, complete genomeEmrB/QacA family drug resistance transporter4e-0652.8
NC_008726:549102:5650055650055664651461Mycobacterium vanbaalenii PYR-1, complete genomedrug resistance transporter, EmrB/QacA subfamily4e-0652.8
NC_008705:1790222:1804688180468818061481461Mycobacterium sp. KMS, complete genomedrug resistance transporter, EmrB/QacA subfamily4e-0652.8
NC_009077:1725683:1740149174014917416091461Mycobacterium sp. JLS, complete genomedrug resistance transporter, EmrB/QacA subfamily4e-0652.8
NC_008146:1748026:1801655180165518031151461Mycobacterium sp. MCS, complete genomeDrug resistance transporter EmrB/QacA subfamily4e-0652.8
NC_014500:1646854:1654867165486716560511185Dickeya dadantii 3937 chromosome, complete genomeputative transport transmembrane protein5e-0652.8
NC_007498:919697:9268129268129280081197Pelobacter carbinolicus DSM 2380, complete genomemajor facilitator superfamily transport protein7e-0652.4