Pre_GI Gene

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Host: NC_012668 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012668:3037345 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
30373453037659315hypothetical proteinBLASTP
30377473038652906DNA polymerase III epsilon subunit-like 3-5 exonucleaseQuickGO ontologyBLASTP
30392913039740450error-prone repair protein UmuDQuickGO ontologyBLASTP
30397093040017309error-prone repair protein UmuCQuickGO ontologyBLASTP
304060230418011200transposaseQuickGO ontologyBLASTP
30418403041947108hypothetical proteinBLASTP
30424463043261816dihydropteroate synthaseQuickGO ontologyBLASTP
30433223044125804aminoglycoside 3-phosphotransferaseQuickGO ontologyBLASTP
30441163044961846aminoglycosidehydroxyurea antibiotic resistance kinaseQuickGO ontologyBLASTP
30452393045385147hypothetical protein
304563330466551023cobalt-zinc-cadmium resistance protein czcDQuickGO ontologyBLASTP
30467903047173384hypothetical proteinBLASTP
30473523047546195StrA aminoglycoside phosphotransferaseQuickGO ontologyBLASTP
30476843048361678tetracycline repressorQuickGO ontologyBLASTP
304836530496391275TetAQuickGO ontologyBLASTP
30498913050196306LysR family transcriptional regulatorQuickGO ontologyBLASTP
305022430514381215florfenicolchloramphenicol resistance proteinQuickGO ontologyBLASTP
30516553052539885hypothetical proteinBLASTP
305257030540631494IS phage Tn transposon-related proteinQuickGO ontologyBLASTP
305448130566192139transposase Tn3 family proteinQuickGO ontologyBLASTP
30573243057431108hypothetical proteinBLASTP
305851930596221104error-prone repair protein UmuCQuickGO ontologyBLASTP
30596333060076444hypothetical proteinBLASTP
30600993060233135hypothetical protein
30605413061515975Rod shape determination proteinQuickGO ontologyBLASTP
30615123061787276hypothetical protein
306178930630301242phage IntegraseQuickGO ontologyBLASTP
306316030651782019hypothetical proteinBLASTP