Pre_GI: BLASTP Hits

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Query: NC_004578:6089958:6107952 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 6107952, End: 6108296, Length: 345

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012962:1827000:184627318462731846575303Photorhabdus asymbiotica, complete genomehypothetical protein2e-22104
NC_005810:1130251:114753811475381147858321Yersinia pestis biovar Microtus str. 91001, complete genomeputative DNA-binding prophage protein3e-2097.1
NC_003143:1233128:123507112350711235391321Yersinia pestis CO92, complete genomeputative DNA-binding prophage protein3e-2097.1
NC_017265:1136000:113640111364011136721321Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative DNA-binding prophage protein3e-2097.1
NC_008150:650899:651813651813652127315Yersinia pestis Antiqua, complete genomeputative DNA-binding prophage protein3e-2097.1
NC_008149:3251196:326848332684833268797315Yersinia pestis Nepal516, complete genomeDNA-binding prophage protein3e-2097.1
NC_009381:2939782:295706829570682957382315Yersinia pestis Pestoides F chromosome, complete genomeDNA-binding prophage protein3e-2097.1
NC_014029:1283500:128427412842741284588315Yersinia pestis Z176003 chromosome, complete genomeDNA-binding prophage protein3e-2097.1
NC_017160:1507500:152493015249301525244315Yersinia pestis D182038 chromosome, complete genomeDNA-binding prophage protein3e-2097.1
NC_017168:4155143:415709341570934157407315Yersinia pestis A1122 chromosome, complete genomeputative DNA-binding prophage protein3e-2097.1
NC_004088:3382148:339943433994343399754321Yersinia pestis KIM, complete genomehypothetical protein3e-2097.1
NC_005126:1223042:124160412416041241915312Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein8e-1992.4
NC_012917:3378759:338611533861153386453339Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeaddiction module antidote protein2e-1891.3
NC_014228:2270000:229164022916402291999360Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein9e-1889
NC_013959:2801557:281505728150572815389333Sideroxydans lithotrophicus ES-1 chromosome, complete genomeaddiction module antidote protein3e-1477
NC_014365:2888897:289710528971052897440336Desulfarculus baarsii DSM 2075 chromosome, complete genomeputative addiction module antidote protein2e-1271.2
NC_016830:2247789:226220822622082262516309Pseudomonas fluorescens F113 chromosome, complete genomehypothetical protein2e-0961.2
NC_008751:1736512:174539317453931745686294Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeputative transcriptional regulator4e-0960.1
NC_017059:1727095:173389717338971734196300Rhodospirillum photometricum DSM 122, complete genometranscriptional regulator6e-0959.7
NC_014216:2538500:255778825577882557940153Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomehypothetical protein8e-0959.3
NC_015713:1594114:161339816133981613691294Simkania negevensis Z chromosome gsn.131, complete genomehypothetical protein1e-0858.5
NC_008751:1762562:178264317826431782906264Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeputative transcriptional regulator1e-0858.5
NC_012560:3667177:367890236789023679222321Azotobacter vinelandii DJ, complete genometranscriptional regulator2e-0858.2
NC_021150:3667176:367890136789013679221321Azotobacter vinelandii CA6, complete genometranscriptional regulator2e-0858.2
NC_008782:3110744:312702031270203127334315Acidovorax sp. JS42, complete genomeputative transcriptional regulator5e-0856.6
NC_014910:242845:277930277930278247318Alicycliphilus denitrificans BC chromosome, complete genometranscriptional regulator8e-0855.8
NC_009655:1357486:136691113669111367201291Actinobacillus succinogenes 130Z chromosome, complete genomeputative transcriptional regulator1e-0755.1
NC_005126:3204980:320905132090513209344294Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein2e-0754.7
NC_009925:1003000:101152210115221011815294Acaryochloris marina MBIC11017, complete genomeaddiction module antitoxin, putative3e-0753.9
NC_010939:1986263:202145920214592021767309Actinobacillus pleuropneumoniae serovar 7 str. AP76, completehypothetical protein5e-0753.1
NC_010278:1918000:194414319441431944451309Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,transcriptional regulator5e-0753.1
NC_005230:32647:358913589136178288Synechocystis sp. PCC 6803 plasmid pSYSA, complete sequencehypothetical protein8e-0752.4
NC_017267:2698944:271560627156062715911306Xanthomonas oryzae pv. oryzicola BLS256 chromosome, completeputative addiction module antidote protein1e-0652.4
NC_020829:5620826:562475656247565625049294Pseudomonas denitrificans ATCC 13867, complete genomeputative transcriptional regulator2e-0651.6
NC_008740:2989856:299684629968462997169324Marinobacter aquaeolei VT8, complete genomeputative transcriptional regulator2e-0651.6
NC_007275:1:387338734169297Pseudomonas syringae pv. phaseolicola 1448A small plasmid, completetranscriptional regulator, Cro/CI family1e-0651.6
NC_010338:1216385:122227512222751223102828Caulobacter sp. K31, complete genomeputative transcriptional regulator2e-0650.8
NC_014246:1402500:143472214347221435015294Mobiluncus curtisii ATCC 43063 chromosome, complete genomeputative transcription regulator3e-0650.8
NC_016043:471719:487663487663487956294Taylorella asinigenitalis MCE3 chromosome, complete genomeputative antitoxin3e-0650.4
NC_012857:557911:577119577119577577459Ralstonia pickettii 12D chromosome 2, complete genome3e-0650.4
NC_008609:2840249:285128028512802851732453Pelobacter propionicus DSM 2379, complete genomeputative transcriptional regulator3e-0650.4
NC_009337:715500:761974761974762267294Chlorobium phaeovibrioides DSM 265 chromosome, complete genomeputative transcriptional regulator4e-0650.1
NC_010678:114000:133388133388133783396Ralstonia pickettii 12J chromosome 2, complete sequenceputative transcriptional regulator4e-0650.1
NC_017033:1052000:107177210717721072077306Frateuria aurantia DSM 6220 chromosome, complete genomeputative addiction module antidote protein5e-0649.7
NC_011206:1264639:128691812869181287217300Acidithiobacillus ferrooxidans ATCC 53993, complete genomeputative transcriptional regulator7e-0649.3
NC_014323:4792048:483557948355794836058480Herbaspirillum seropedicae SmR1 chromosome, complete genometranscription regulator protein8e-0649.3