Pre_GI: BLASTP Hits

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Query: NC_004578:2560473:2566716 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 2566716, End: 2568320, Length: 1605

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008463:1912348:1939714193971419412911578Pseudomonas aeruginosa UCBPP-PA14, complete genomepossible recombinase5e-102372
NC_007492:3954345:3962384396238439639821599Pseudomonas fluorescens PfO-1, complete genomeRecombinase5e-75282
NC_016616:760145:7740577740577757781722Dechlorosoma suillum PS chromosome, complete genomesite-specific recombinase, DNA invertase Pin2e-40167
NC_004547:2810151:2825271282527128268811611Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative integrase/recombinase2e-28127
NC_007517:3524715:3540161354016135420291869Geobacter metallireducens GS-15, complete genomeResolvase-like:Recombinase5e-26119
NC_007519:2773000:2776921277692127788551935Desulfovibrio alaskensis G20 chromosome, complete genomehypothetical protein1e-25118
NC_011979:646518:6672356672356690941860Geobacter sp. FRC-32, complete genomeRecombinase1e-24115
NC_009801:1392696:1412677141267714141971521Escherichia coli E24377A, complete genomeputative recombinase5e-24113
NC_011769:3434744:3450826345082634525981773Desulfovibrio vulgaris str. 'Miyazaki F', complete genomeRecombinase4e-24113
NC_012559:854507:8853478853478863481002Laribacter hongkongensis HLHK9, complete genomeRecombinase7e-24112
NC_011146:4196652:4202142420214242037791638Geobacter bemidjiensis Bem, complete genomeRecombinase1e-23111
NC_011748:824367:8316568316568331821527Escherichia coli 55989, complete genomeputative site-specific invertase; DLP12 prophage4e-23110
CU928145:824367:8316568316568331821527Escherichia coli 55989 chromosome, complete genomeputative site-specific invertase; DLP12 prophage4e-23110
AC_000091:558920:5681255681255696511527Escherichia coli W3110 DNA, complete genomepredicted recombinase3e-23110
NC_000913:558920:5681255681255696511527Escherichia coli K12, complete genomeDLP12 prophage; predicted recombinase3e-23110
NC_010473:498252:5074575074575089831527Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; predicted recombinase3e-23110
NC_011353:2957962:2968757296875729702831527Escherichia coli O157:H7 str. EC4115 chromosome, complete genomerecombinase family protein3e-23110
NC_012759:461680:4708854708854724111527Escherichia coli BW2952 chromosome, complete genomeDLP12 prophage; putative recombinase3e-23110
NC_012947:3231893:3243361324336132448871527Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeRecombinase3e-23110
NC_012967:531000:5407925407925423181527Escherichia coli B str. REL606 chromosome, complete genomeputative recombinase3e-23110
NC_013008:2910567:2923628292362829251541527Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeDLP12 prophage recombinase3e-23110
NC_013941:699286:7082487082487097741527Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeDLP12 prophage; recombinase3e-23110
NC_011415:600375:6208596208596223851527Escherichia coli SE11 chromosome, complete genomeputative phage recombinase2e-23110
NC_016812:4246542:4250124425012442512931170Sinorhizobium fredii HH103, complete genomesite-specific recombinase2e-23110
NC_007384:2007467:2008715200871520102351521Shigella sonnei Ss046, complete genomehypothetical bacteriophage protein2e-22107
NC_009832:1664238:1681671168167116831821512Serratia proteamaculans 568, complete genomeResolvase domain5e-22106
NC_009659:3520093:3543028354302835448781851Janthinobacterium sp. Marseille chromosome, complete genomesite-specific recombinase5e-22106
NC_002947:1268089:1281215128121512829061692Pseudomonas putida KT2440, complete genomerecombinase-related protein1e-20101
NC_020209:4549563:4562999456299945646901692Pseudomonas poae RE*1-1-14, complete genomerecombinase2e-20101
NC_002678:3701500:3705162370516237068981737Mesorhizobium loti MAFF303099, complete genomesite-specific recombinase9e-2099
NC_011979:773673:7870917870917889321842Geobacter sp. FRC-32, complete genomeRecombinase1e-1998.2
NC_015633:1702000:1709920170992017117971878Vibrio anguillarum 775 chromosome chromosome I, complete sequenceSite-specific recombinase2e-1997.8
NC_008781:2575213:2579464257946425810861623Polaromonas naphthalenivorans CJ2, complete genomeRecombinase6e-1892.8
NC_007614:109000:1135631135631151971635Nitrosospira multiformis ATCC 25196 chromosome 1, completeRecombinase1e-1791.3
NC_002947:3404000:3412988341298834146131626Pseudomonas putida KT2440, complete genomephage recombinase, putative2e-1790.9
NC_012988:2455807:2460335246033524620831749Methylobacterium extorquens DM4, complete genomerecombinase2e-1790.9
NC_007493:1672163:1704748170474817062771530Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequenceputative site-specific recombinase6e-1686.3
NC_010338:3743000:3747659374765937493741716Caulobacter sp. K31, complete genomeRecombinase9e-1685.5
NC_011283:2185462:2199912219991222014831572Klebsiella pneumoniae 342 chromosome, complete genomesite-specific recombinase, resolvase family2e-1584.3
NC_014121:2330451:2335767233576723375361770Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein8e-1582.4
NC_007347:3612918:3619050361905036208191770Ralstonia eutropha JMP134 chromosome 1, complete sequenceRecombinase8e-1582.4
NC_013850:2103469:2133323213332321348941572Klebsiella variicola At-22 chromosome, complete genomeResolvase domain protein1e-1482
NC_014375:1242750:1243226124322612449291704Brevundimonas subvibrioides ATCC 15264 chromosome, complete genomeRecombinase3e-1480.5
NC_018678:1820390:1826786182678618284561671Alteromonas macleodii str. 'English Channel 673' chromosome,site-specific recombinase4e-1480.1
NC_020211:2012480:2021007202100720226861680Serratia marcescens WW4, complete genomeputative recombinase, DLP12 prophage1e-1378.6
NC_013364:1997891:200295320029532003306354Escherichia coli O111:H- str. 11128, complete genome1e-1378.6
NC_016614:1178000:1189433118943311912291797Vibrio sp. EJY3 chromosome 2, complete sequencesite-specific recombinase1e-1275.5
NC_003910:486776:4939534939534959982046Colwellia psychrerythraea 34H, complete genomeputative site-specific recombinase4e-1170.1
NC_017047:3085000:3123842312384231255751734Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein1e-1068.2
NC_005070:1331741:1342597134259713446002004Synechococcus sp. WH 8102, complete genomepartial homology to phage recombinase1e-0965.5
NC_009778:2227627:2270858227085822726601803Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein3e-0860.8
NC_015660:3174424:3178571317857131800281458Geobacillus thermoglucosidasius C56-YS93 chromosome, completeResolvase domain-containing protein2e-0860.8
NC_006510:591339:6202266202266216801455Geobacillus kaustophilus HTA426, complete genomecassette chromosome recombinase B2e-0860.8
NC_016593:596500:6317386317386331921455Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeresolvase domain-containing protein2e-0860.8
NC_021066:3201500:3217811321781132193071497Raoultella ornithinolytica B6, complete genomeputative recombinase, DLP12 prophage5e-0859.7
NC_014006:850763:8565128565128582571746Sphingobium japonicum UT26S chromosome 1, complete genomeinvertase/recombinase like protein6e-0859.7
NC_013890:103807:1038071038071052641458Dehalococcoides sp. GT chromosome, complete genome9e-0858.9
NC_009445:6621996:6670258667025866718681611Bradyrhizobium sp. ORS 278 chromosome, complete genomerecombinase3e-0757
NC_012914:5446366:5467858546785854693391482Paenibacillus sp. JDR-2, complete genomeResolvase domain protein2e-0654.3
NC_017047:1796000:1800214180021418019651752Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein4e-0653.5