Pre_GI: BLASTP Hits

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Query: NC_004547:913553:938530 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 938530, End: 939795, Length: 1266

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012917:833721:8569088569088581731266Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeextracellular solute-binding protein family 10772
NC_013421:1038500:1042630104263010438951266Pectobacterium wasabiae WPP163, complete genomeextracellular solute-binding protein family 10762
NC_011653:1574415:1579050157905015803001251Thermosipho africanus TCF52B, complete genomelactose-binding protein3e-105382
NC_015385:2135456:2146837214683721481171281Treponema succinifaciens DSM 2489 chromosome, complete genomeextracellular solute-binding protein family 18e-74277
NC_020995:3300751:3300751330075133020461296Enterococcus casseliflavus EC20, complete genomehypothetical protein1e-71270
NC_015732:773143:7933897933897946871299Spirochaeta caldaria DSM 7334 chromosome, complete genomeextracellular solute-binding protein family 13e-67256
NC_015675:2567000:2580950258095025822211272Mesorhizobium opportunistum WSM2075 chromosome, complete genomefamily 1 extracellular solute-binding protein3e-29129
NC_019973:2417000:2430787243078724320581272Mesorhizobium australicum WSM2073, complete genomeABC-type sugar transport system, periplasmic component6e-27122
NC_014923:2439197:2453772245377224550431272Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeextracellular solute-binding protein family 15e-25115
NC_015671:874500:8980898980898994231335Cellvibrio gilvus ATCC 13127 chromosome, complete genomefamily 1 extracellular solute-binding protein8e-1685.1
NC_017167:1088713:1097975109797510992851311Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1extracellular solute-binding protein2e-1273.6
NC_014206:1694330:1714328171432817156381311Geobacillus sp. C56-T3 chromosome, complete genomefamily 1 extracellular solute-binding protein1e-1068.2
NC_015577:1462874:1468358146835814696891332Treponema azotonutricium ZAS-9 chromosome, complete genomeputative family 1 extracellular solute-binding protein9e-1065.1
NC_021182:300415:3160413160413173181278Clostridium pasteurianum BC1, complete genomeABC-type sugar transport system, periplasmic component1e-0964.7
NC_015052:2383865:2388169238816923895091341Bifidobacterium longum subsp. infantis 157F, complete genomeABC transporter substrate-binding protein4e-0963.2
NC_016582:1751988:1764160176416017654761317Streptomyces bingchenggensis BCW-1 chromosome, complete genomesolute binding lipoprotein2e-0860.8
NC_013093:2895511:2906250290625029075991350Actinosynnema mirum DSM 43827, complete genomeextracellular solute-binding protein family 14e-0859.7
NC_010516:127000:1428581428581441321275Clostridium botulinum B1 str. Okra, complete genomeputative sugar-binding protein1e-0758.2
NC_017297:122383:1381391381391394131275Clostridium botulinum F str. 230613 chromosome, complete genomeputative sugar-binding protein1e-0758.2
NC_009699:122000:1378741378741391481275Clostridium botulinum F str. Langeland chromosome, complete genomesugar-binding protein1e-0758.2
NC_010520:121077:1368521368521381261275Clostridium botulinum A3 str. Loch Maree, complete genomeputative sugar-binding protein2e-0757.4
NC_013235:1938889:1944081194408119454781398Nakamurella multipartita DSM 44233, complete genomeextracellular solute-binding protein family 13e-0757
NC_009495:128000:1430651430651443391275Clostridium botulinum A str. ATCC 3502 chromosome, complete genomesugar-binding protein2e-0757
NC_009697:120117:1358681358681371421275Clostridium botulinum A str. ATCC 19397 chromosome, completesugar-binding protein2e-0757
NC_009698:120119:1358701358701371441275Clostridium botulinum A str. Hall chromosome, complete genomesugar-binding protein2e-0757
NC_012563:122000:1370011370011382751275Clostridium botulinum A2 str. Kyoto, complete genomeputative arabinose-binding protein4e-0756.2
NC_012658:125500:1405101405101417841275Clostridium botulinum Ba4 str. 657 chromosome, complete genomeputative arabinose-binding protein6e-0755.8
NC_006322:2886404:2908934290893429102381305Bacillus licheniformis ATCC 14580, complete genomeAraN7e-0652.4