Pre_GI: BLASTP Hits

Some Help

Query: NC_004547:1970686:1989440 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 1989440, End: 1990078, Length: 639

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012917:2921932:292512129251212925759639Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeRibose/galactose isomerase8e-120429
NC_013421:3117639:312485131248513125489639Pectobacterium wasabiae WPP163, complete genomeRibose/galactose isomerase1e-119428
NC_013592:1730505:175465617546561755294639Dickeya dadantii Ech586, complete genomeRibose/galactose isomerase3e-114410
NC_012912:1788308:181736218173621818000639Dickeya zeae Ech1591, complete genomeRibose/galactose isomerase1e-108392
NC_014500:3023762:303036030303603030998639Dickeya dadantii 3937 chromosome, complete genomeGalactose-6-phosphate isomerase LacB subunit5e-106383
NC_010001:615427:622395622395623030636Clostridium phytofermentans ISDg, complete genomeRibose/galactose isomerase2e-88324
NC_009442:1158268:117012811701281170769642Streptococcus suis 05ZYH33 chromosome, complete genomehypothetical protein5e-80296
NC_004460:973738:985323985323985958636Vibrio vulnificus CMCP6 chromosome II, complete sequencehypothetical protein2e-60232
NC_004431:279868:289106289106289744639Escherichia coli CFT073, complete genomehypothetical protein1e-60232
NC_009655:1626466:163661316366131637254642Actinobacillus succinogenes 130Z chromosome, complete genomehypothetical protein3e-59228
NC_010634:2252329:225742722574272258065639Yersinia pseudotuberculosis PB1/+, complete genomeribose/galactose isomerase6e-59226
NC_008150:1543635:154873315487331549371639Yersinia pestis Antiqua, complete genomeputative sugar-phosphate isomerase6e-59226
NC_003143:2258636:226373422637342264372639Yersinia pestis CO92, complete genomehypothetical protein6e-59226
NC_005810:2043730:204882920488292049467639Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein6e-59226
NC_010465:2428620:244005424400542440692639Yersinia pseudotuberculosis YPIII, complete genomeRibose/galactose isomerase6e-59226
NC_006155:2334122:233922023392202339858639Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein6e-59226
NC_004088:2541033:255247925524792553117639Yersinia pestis KIM, complete genomehypothetical protein6e-59226
NC_008149:1669921:167501916750191675657639Yersinia pestis Nepal516, complete genomesugar-phosphate isomerase6e-59226
NC_009381:1258396:126907312690731269711639Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein6e-59226
NC_009708:2392640:240408724040872404725639Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein6e-59226
NC_014029:2335021:234646723464672347105639Yersinia pestis Z176003 chromosome, complete genomehypothetical protein6e-59226
NC_017265:2263347:227343722734372274075639Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative sugar-phosphate isomerase6e-59226
NC_005139:518760:530553530553531194642Vibrio vulnificus YJ016 chromosome I, complete sequencehypothetical protein7e-54209
NC_017154:2258228:226332622633262263736411Yersinia pestis D106004 chromosome, complete genomesugar-phosphate isomerase3e-37155