Pre_GI: BLASTP Hits

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Query: NC_004129:3452885:3482711 Pseudomonas fluorescens Pf-5, complete genome

Start: 3482711, End: 3483799, Length: 1089

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013446:2062862:2070408207040820714811074Comamonas testosteroni CNB-2, complete genomeCholoylglycine hydrolase2e-147521
NC_010002:3785313:3798971379897138001011131Delftia acidovorans SPH-1, complete genomeCholoylglycine hydrolase3e-145514
NC_015563:3786192:3793344379334437944171074Delftia sp. Cs1-4 chromosome, complete genomecholoylglycine hydrolase1e-144513
NC_009255:1890112:1916327191632719174061080Burkholderia vietnamiensis G4 chromosome 2, complete sequencecholoylglycine hydrolase4e-144511
NC_016745:2280375:2285710228571022867681059Oceanimonas sp. GK1 chromosome, complete genomeCholoylglycine hydrolase8e-137486
NC_013743:3193355:320076532007653201760996Haloterrigena turkmenica DSM 5511, complete genomeCholoylglycine hydrolase5e-121434
NC_006576:2073163:2083008208300820840511044Synechococcus elongatus PCC 6301, complete genomeprobable hydrolase1e-115416
NC_007604:2213659:2232979223297922340221044Synechococcus elongatus PCC 7942, complete genomeprobable hydrolase1e-115416
NC_011761:2546081:2563893256389325649631071Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completecholoylglycine hydrolase1e-99363
NC_011206:2447905:2465717246571724667871071Acidithiobacillus ferrooxidans ATCC 53993, complete genomeCholoylglycine hydrolase1e-99363
NC_009138:1544835:156482415648241565492669Herminiimonas arsenicoxydans, complete genomeputative choloylglycine hydrolase protein (partial)7e-97354
NC_002506:822401:8307118307118317871077Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completehydrolase, putative2e-93343
NC_009456:383819:3933313933313944071077Vibrio cholerae O395 chromosome 1, complete sequenceputative hydrolase2e-93343
NC_012580:796387:8046978046978057731077Vibrio cholerae M66-2 chromosome II, complete sequencehydrolase2e-93343
NC_012583:861225:8695358695358706111077Vibrio cholerae O395 chromosome chromosome II, complete sequenceputative hydrolase2e-93343
NC_012667:504534:5140455140455151211077Vibrio cholerae MJ-1236 chromosome 2, complete genomehypothetical protein2e-93343
NC_016446:522936:5312435312435323191077Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, completecholoylglycine hydrolase2e-93343
NC_016945:822229:8305368305368316121077Vibrio cholerae IEC224 chromosome II, complete sequencecholoylglycine hydrolase2e-93343
NC_008319:962968:1018254101825410193421089Synechococcus sp. CC9311, complete genomecholoylglycine hydrolase1e-93343
NC_014532:1873169:1878712187871218797641053Halomonas elongata DSM 2581, complete genomecholoylglycine hydrolase6e-56218
NC_021172:3786725:379755837975583798304747Hyphomicrobium denitrificans 1NES1, complete genomecholoylglycine hydrolase family protein7e-46184
NC_020064:4751097:4766810476681047678891080Serratia marcescens FGI94, complete genomepenicillin amidase7e-39161
NC_009138:1544835:156442915644291564800372Herminiimonas arsenicoxydans, complete genomeputative choloylglycine hydrolase protein (partial)4e-28125
NC_008261:817295:838665838665839654990Clostridium perfringens ATCC 13124, complete genomecholoylglycine hydrolase3e-1583.2
NC_009663:2531876:2546857254685725479541098Sulfurovum sp. NBC37-1, complete genomecholoylglycine hydrolase6e-1582
NC_010184:3590895:359089535908953591881987Bacillus weihenstephanensis KBAB4, complete genomeCholoylglycine hydrolase6e-1272
NC_015761:1488807:1492841149284114939291089Salmonella bongori NCTC 12419, complete genomesecreted hydrolase3e-1169.7
NC_016856:1621279:1625310162531016264011092Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative hydrolase1e-1067.8
NC_003197:1611302:1615333161533316164241092Salmonella typhimurium LT2, complete genomeputative hydrolase1e-1067.8
NC_003198:1463253:1478591147859114796821092Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative secreted hydrolase1e-1067.8
NC_014616:1065500:107027810702781071228951Bifidobacterium bifidum S17 chromosome, complete genomeCholoylglycine hydrolase2e-0860.5
NC_021172:3786725:379830137983013798606306Hyphomicrobium denitrificans 1NES1, complete genomehypothetical protein3e-0652.8