Pre_GI: BLASTP Hits

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Query: NC_004088:4202247:4208533 Yersinia pestis KIM, complete genome

Start: 4208533, End: 4208628, Length: 96

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009381:3680638:36869463686946368704196Yersinia pestis Pestoides F chromosome, complete genome1e-1065.1
NC_003143:398748:41196241196241205493Yersinia pestis CO92, complete genometransposase (partial)3e-1063.9
NC_009786:43331:4624146241474061166Escherichia coli E24377A plasmid pETEC_80, complete sequence3e-0753.9
NC_007384:1320287:1339949133994913411211173Shigella sonnei Ss046, complete genomeIS21 ORF16e-0753.1
NC_007384:16500:1792117921190931173Shigella sonnei Ss046, complete genomeIS21 ORF16e-0753.1
NC_016822:1304398:1323567132356713247391173Shigella sonnei 53G, complete genomeintegrase for IS21, orfA6e-0753.1
NC_016822:1431200:1448391144839114495631173Shigella sonnei 53G, complete genomeintegrase for IS21, orfA6e-0753.1
NC_016822:3946500:3949797394979739509691173Shigella sonnei 53G, complete genomeintegrase for IS21, orfA6e-0753.1
NC_016822:15401:171421714218125984Shigella sonnei 53G, complete genomeintegrase for IS21, orfA5e-0753.1
NC_007384:3741708:3758338375833837594591122Shigella sonnei Ss046, complete genomeIS21 ORF15e-0753.1
NC_009801:2898426:2926464292646429276361173Escherichia coli E24377A, complete genometransposase, IS21 family6e-0752.8
NC_009801:995396:1011492101149210126641173Escherichia coli E24377A, complete genometransposase, IS21 family6e-0752.8
NC_009801:3374501:3391753339175333929251173Escherichia coli E24377A, complete genometransposase, IS21 family6e-0752.8
NC_011750:3545466:355994535599453560358414Escherichia coli IAI39 chromosome, complete genome1e-0652
NC_007414:56508:778637786378273411Escherichia coli O157:H7 EDL933 plasmid pO157, complete sequencetransposase1e-0652
NC_002128:35000:553025530255712411Escherichia coli O157:H7 str. Sakai plasmid pO157, completetransposase1e-0652