Pre_GI: BLASTP Hits

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Query: NC_003305:1:1992 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1992, End: 2375, Length: 384

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003063:2059311:207238120723812072764384Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein4e-69259
NC_009937:4350132:435953643595364360141606Azorhizobium caulinodans ORS 571, complete genomeputative transposase9e-1992
NC_010742:529500:533315533315534133819Brucella abortus S19 chromosome 1, complete sequenceTransposase1e-1478.6
NC_015857:531314:534835534835535653819Brucella pinnipedialis B2/94 chromosome chromosome 1, completetransposase2e-1478.2
NC_013119:511500:515504515504516322819Brucella microti CCM 4915 chromosome 1, complete sequencetransposase2e-1478.2
NC_016797:508414:513308513308514126819Brucella suis VBI22 chromosome I, complete sequencetransposase2e-1478.2
NC_017251:508469:513363513363514181819Brucella suis 1330 chromosome I, complete genometransposase2e-1478.2
NC_012441:529500:533487533487534305819Brucella melitensis ATCC 23457 chromosome I, complete sequencetransposase and inactivated derivatives-like protein1e-1478.2
NC_010169:527500:531367531367532185819Brucella suis ATCC 23445 chromosome I, complete sequencetransposase for insertion sequence element IS65014e-1476.6
NC_021150:898428:906708906708907445738Azotobacter vinelandii CA6, complete genomeTransposase, IS46e-1476.3
NC_012560:898416:906696906696907433738Azotobacter vinelandii DJ, complete genomeTransposase, IS46e-1476.3
NC_010103:507482:512018512018512836819Brucella canis ATCC 23365 chromosome I, complete sequencetransposase for insertion sequence element IS65012e-1374.3
NC_017030:4237034:425968842596884260431744Corallococcus coralloides DSM 2259 chromosome, complete genomeIS5 family transposase OrfA6e-1372.8
NC_014228:3534378:354649135464913547102612Xenorhabdus nematophila ATCC 19061, complete genometransposase (fragment)1e-1272
NC_008750:2332000:235098323509832351744762Shewanella sp. W3-18-1, complete genometransposase, IS4 family protein1e-1271.6
NC_014228:1712339:174251117425111743272762Xenorhabdus nematophila ATCC 19061, complete genometransposase6e-1269.3
NC_004347:3028000:303831330383133039071759Shewanella oneidensis MR-1, complete genomehypothetical ISSod6, transposase9e-1268.9
NC_004310:508483:513377513377513797421Brucella suis 1330 chromosome I, complete sequence1e-1168.9
NC_015957:115133:126468126468127361894Streptomyces violaceusniger Tu 4113 chromosome, complete genometransposase IS4 family protein1e-1168.9
NC_013446:1648556:167390716739071674587681Comamonas testosteroni CNB-2, complete genometransposase1e-1168.6
NC_003155:5443230:545563154556315456419789Streptomyces avermitilis MA-4680, complete genomeIS1648-like transposase2e-1168.2
NC_014228:2883500:290947029094702910231762Xenorhabdus nematophila ATCC 19061, complete genometransposase1e-1168.2
NC_015976:1064888:108418210841821084601420Sphingobium sp. SYK-6, complete genomeputative transposase for insertion sequence element9e-1165.5
NC_008526:343445:344747344747345505759Lactobacillus casei ATCC 334, complete genomeTransposase3e-1063.9
NC_002678:4859111:487275848727584873120363Mesorhizobium loti MAFF303099, complete genometransposase3e-0960.5
NC_002678:5714000:572108757210875721449363Mesorhizobium loti MAFF303099, complete genometransposase3e-0960.5
NC_010725:4035397:403667440366744037431758Methylobacterium populi BJ001, complete genomeTransposase and inactivated derivatives-like protein4e-0960.5
NC_009749:1776600:177868317786831779339657Francisella tularensis subsp. holarctica FTA, complete genometransposase (IS4 family)4e-0960.1
NC_007880:1780702:178278517827851783414630Francisella tularensis subsp. holarctica, complete genomeTransposase5e-0959.7
NC_016585:116143:118365118365118898534Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence1e-0858.2
NC_006932:531000:549666549666550429764Brucella abortus biovar 1 str. 9-941 chromosome I, completetransposase orfA2e-0857.8
NC_017248:529500:548147548147548626480Brucella melitensis NI chromosome chromosome I, complete sequencetransposase-like protein2e-0857.8
NC_016778:515525:526224526224526550327Brucella canis HSK A52141 chromosome 1, complete sequenceISBm1, transposase orfA2e-0857.8
NC_004310:508483:528047528047528475429Brucella suis 1330 chromosome I, complete sequenceISBm1, transposase orfA3e-0857.4
NC_010103:507482:526691526691527119429Brucella canis ATCC 23365 chromosome I, complete sequencehypothetical protein3e-0857.4
NC_010169:527500:540502540502540930429Brucella suis ATCC 23445 chromosome I, complete sequencehypothetical protein3e-0857.4
NC_013119:511500:524456524456525067612Brucella microti CCM 4915 chromosome 1, complete sequenceISBm1, transposase orfA3e-0857.4
NC_013119:511500:530171530171530599429Brucella microti CCM 4915 chromosome 1, complete sequenceISBm1, transposase orfA3e-0857.4
NC_007618:526400:545961545961546389429Brucella melitensis biovar Abortus 2308 chromosome I, completeISBm1, transposase orfA3e-0857.4
NC_010103:507482:521157521157521585429Brucella canis ATCC 23365 chromosome I, complete sequencehypothetical protein3e-0857.4
NC_004310:508483:522514522514522942429Brucella suis 1330 chromosome I, complete sequenceISBm1, transposase orfA3e-0857.4
NC_016797:508414:522445522445522873429Brucella suis VBI22 chromosome I, complete sequenceISBm1, transposase orfA3e-0857.4
NC_016797:508414:527978527978528406429Brucella suis VBI22 chromosome I, complete sequenceISBm1, transposase orfA3e-0857.4
NC_017251:508469:522500522500522928429Brucella suis 1330 chromosome I, complete genomeISBm1, transposase orfA3e-0857.4
NC_017251:508469:528033528033528461429Brucella suis 1330 chromosome I, complete genomeISBm1, transposase orfA3e-0857.4
NC_012441:529500:548152548152548580429Brucella melitensis ATCC 23457 chromosome I, complete sequenceISBm1 transposase orfA3e-0857.4
NC_010169:527500:546035546035546463429Brucella suis ATCC 23445 chromosome I, complete sequencehypothetical protein2e-0857.4
NC_015857:531314:550295550295550774480Brucella pinnipedialis B2/94 chromosome chromosome 1, completeISBm1, transposase orfA2e-0857.4
NC_009720:251703:257373257373257801429Xanthobacter autotrophicus Py2, complete genometransposase IS4 family protein4e-0857
NC_009720:2945655:296574029657402966168429Xanthobacter autotrophicus Py2, complete genometransposase IS4 family protein4e-0857
NC_007406:2615916:263486626348662635231366Nitrobacter winogradskyi Nb-255, complete genomeISBm1, transposase orfA3e-0857
NC_008757:111292:123239123239123628390Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, completetransposase, IS4 family protein5e-0856.6
NC_009505:531000:544127544127544555429Brucella ovis ATCC 25840 chromosome I, complete sequenceISBm1, transposase orfA5e-0856.6
NC_009505:531000:549549549549549977429Brucella ovis ATCC 25840 chromosome I, complete sequenceISBm1, transposase orfA5e-0856.6
NC_014391:4672105:467890846789084679801894Micromonospora aurantiaca ATCC 27029 chromosome, complete genometransposase IS4 family protein4e-0856.6
NC_014391:4672105:469164646916464692539894Micromonospora aurantiaca ATCC 27029 chromosome, complete genometransposase IS4 family protein4e-0856.6
NC_017244:529500:544353544353544862510Brucella melitensis M28 chromosome chromosome 1, complete sequencehypothetical protein4e-0856.6
NC_017244:726893:727948727948728457510Brucella melitensis M28 chromosome chromosome 1, complete sequencehypothetical protein4e-0856.6
NC_017246:528825:544600544600545109510Brucella melitensis M5-90 chromosome chromosome I, completetransposase4e-0856.6
NC_017246:727143:728198728198728707510Brucella melitensis M5-90 chromosome chromosome I, completetransposase4e-0856.6
NC_010660:175200:197791197791198306516Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequencetransposase (IS4 family)4e-0856.6
NC_003317:1443874:146010314601031460411309Brucella melitensis 16M chromosome I, complete sequenceTRANSPOSASE7e-0856.2
NC_012441:529500:542741542741543049309Brucella melitensis ATCC 23457 chromosome I, complete sequenceISBm1 transposase orfA7e-0856.2
NC_006932:531000:546070546070546507438Brucella abortus biovar 1 str. 9-941 chromosome I, completeIS711, transposase orfB6e-0856.2
NC_006932:956805:963848963848964282435Brucella abortus biovar 1 str. 9-941 chromosome I, completeIS711, transposase orfB6e-0856.2
NC_009720:2945655:296614429661442966542399Xanthobacter autotrophicus Py2, complete genomeISBm1, transposase orfA6e-0856.2
NC_009720:251703:256999256999257397399Xanthobacter autotrophicus Py2, complete genomeISBm1, transposase orfA6e-0856.2
NC_015857:531314:544631544631545242612Brucella pinnipedialis B2/94 chromosome chromosome 1, completeISBm1, transposase orfA6e-0856.2
NC_003317:1443874:145457114545711454879309Brucella melitensis 16M chromosome I, complete sequenceTRANSPOSASE7e-0855.8
NC_009342:135500:157789157789158430642Corynebacterium glutamicum R chromosome, complete genomehypothetical protein7e-0855.8
NC_003155:3994:236752367524559885Streptomyces avermitilis MA-4680, complete genomeIS1647-like transposase1e-0755.5
NC_006932:531000:544136544136544857722Brucella abortus biovar 1 str. 9-941 chromosome I, completeISBm1, transposase orfA1e-0755.5
NC_010742:529500:542452542452542880429Brucella abortus S19 chromosome 1, complete sequenceISBm1, transposase orfA1e-0755.5
NC_007618:526400:540431540431540859429Brucella melitensis biovar Abortus 2308 chromosome I, completeISBm1, transposase orfA1e-0755.5
NC_016795:1857296:187352318735231873849327Brucella abortus A13334 chromosome 1, complete sequencetransposase-like protein9e-0855.5
NC_013595:7302888:730844873084487309146699Streptosporangium roseum DSM 43021, complete genome1e-0755.1
NC_017513:548882:557827557827558366540Neisseria meningitidis G2136 chromosome, complete genometransposase IS4 family1e-0755.1
NC_017513:618500:637770637770638309540Neisseria meningitidis G2136 chromosome, complete genometransposase IS4 family1e-0755.1
NC_017513:887344:898525898525899064540Neisseria meningitidis G2136 chromosome, complete genometransposase IS4 family1e-0755.1
NC_017513:997716:100476010047601005299540Neisseria meningitidis G2136 chromosome, complete genometransposase IS4 family1e-0755.1
NC_017513:997716:101901510190151019554540Neisseria meningitidis G2136 chromosome, complete genometransposase IS4 family1e-0755.1
NC_017515:1855114:186604018660401866579540Neisseria meningitidis M04-240196 chromosome, complete genometransposase IS4 family1e-0755.1
NC_017515:76861:847418474185280540Neisseria meningitidis M04-240196 chromosome, complete genometransposase IS4 family1e-0755.1
NC_017904:4742775:476465647646564765207552Mycobacterium sp. MOTT36Y chromosome, complete genometransposase, IS4 family protein2e-0754.7
NC_014310:279912:301920301920302426507Ralstonia solanacearum PSI07 megaplasmid, complete sequencetransposase, is4-like2e-0754.7
NC_017515:76861:958409584096448609Neisseria meningitidis M04-240196 chromosome, complete genometransposase IS4 family2e-0754.7
NC_009485:1648896:166607216660721666443372Bradyrhizobium sp. BTAi1 chromosome, complete genometransposase2e-0754.3
NC_014819:25765:328143281433577764Asticcacaulis excentricus CB 48 plasmid pASTEX02, completehypothetical protein4e-0753.5
NC_009485:584707:599693599693600007315Bradyrhizobium sp. BTAi1 chromosome, complete genometransposase4e-0753.5
NC_009485:3579323:359763735976373597951315Bradyrhizobium sp. BTAi1 chromosome, complete genometransposase4e-0753.5
NC_015434:666692:672984672984673898915Verrucosispora maris AB-18-032 chromosome, complete genometransposase IS4 family protein4e-0753.5
NC_017248:529500:542769542769543095327Brucella melitensis NI chromosome chromosome I, complete sequencetransposase-like protein6e-0753.1
NC_010572:8408500:842315384231538424049897Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative IS1647-like transposase7e-0752.8
NC_010572:82000:121881121881122777897Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative IS1647-like transposase7e-0752.8
NC_017068:1480148:149272814927281493624897Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative transposase1e-0651.6
NC_016027:1357659:136845213684521368799348Gluconacetobacter xylinus NBRC 3288, complete genometransposase1e-0651.6
NC_016027:1902854:193257019325701932917348Gluconacetobacter xylinus NBRC 3288, complete genometransposase1e-0651.6
NC_015953:6212366:625600562560056256910906Streptomyces sp. SirexAA-E chromosome, complete genometransposase IS4 family protein3e-0650.8
NC_007880:221674:248518248518249213696Francisella tularensis subsp. holarctica, complete genome3e-0650.8
NC_013929:1611940:162919716291971630030834Streptomyces scabiei 87.22 chromosome, complete genometransposase2e-0650.8
NC_006361:1547034:155446515544651555343879Nocardia farcinica IFM 10152, complete genomeputative transposase3e-0650.4
NC_006361:1547034:156463115646311565509879Nocardia farcinica IFM 10152, complete genomeputative transposase4e-0650.1
NC_006361:4098469:413085041308504131743894Nocardia farcinica IFM 10152, complete genomeputative transposase5e-0650.1
NC_009428:1827352:184982718498271850399573Rhodobacter sphaeroides ATCC 17025 chromosome, complete genometransposase, IS4 family protein5e-0649.7
NC_009428:1827352:185846918584691859041573Rhodobacter sphaeroides ATCC 17025 chromosome, complete genometransposase, IS4 family protein5e-0649.7
NC_009428:1827352:186175118617511862323573Rhodobacter sphaeroides ATCC 17025 chromosome, complete genometransposase, IS4 family protein5e-0649.7
NC_009429:686608:692581692581693153573Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, completehypothetical protein5e-0649.7
NC_009429:686608:696450696450697022573Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, completehypothetical protein5e-0649.7
NC_006087:2292791:230524223052422306087846Leifsonia xyli subsp. xyli str. CTCB07, complete genome5e-0649.7
NC_017082:3687638:369729136972913697641351Bradyrhizobium sp. S23321, complete genomeputative insertion element (IS) transposase7e-0649.3
NC_004463:1749000:175519917551991755468270Bradyrhizobium japonicum USDA 110, complete genomeputative transposase8e-0649.3