Pre_GI: OUP Neighbours

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Query: NC_006155:4105542 Yersinia pseudotuberculosis IP 32953, complete genome

D: 34.268

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a fully virulent serotype I strain isolated from a human patient. Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.

Number of Neighbours: 25




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_010465:429095Yersinia pseudotuberculosis YPIII, complete genome76.3021 %Subject ←→ Query29.1646
NC_005810:4469156Yersinia pestis biovar Microtus str. 91001, complete genome76.6789 %Subject ←→ Query29.5112
NC_003143:4006884Yersinia pestis CO92, complete genome76.7279 %Subject ←→ Query29.6176
NC_008149:4053363Yersinia pestis Nepal516, complete genome77.3315 %Subject ←→ Query30.0006
NC_004088:266543Yersinia pestis KIM, complete genome77.1569 %Subject ←→ Query30.0081
NC_006155:4302826Yersinia pseudotuberculosis IP 32953, complete genome77.1324 %Subject ←→ Query30.1556
NC_003143:2778494Yersinia pestis CO92, complete genome83.0331 %Subject ←→ Query30.2293
NC_010634:4234932Yersinia pseudotuberculosis PB1/+, complete genome77.6777 %Subject ←→ Query30.3016
NC_015663:1902344*Enterobacter aerogenes KCTC 2190 chromosome, complete genome75.671 %Subject ←→ Query31.1284
NC_008150:3529430Yersinia pestis Antiqua, complete genome88.1618 %Subject ←→ Query31.4433
NC_012962:3864000*Photorhabdus asymbiotica, complete genome75.3983 %Subject ←→ Query31.492
NC_014306:2476316Erwinia billingiae Eb661, complete genome78.1924 %Subject ←→ Query32.9311
NC_004088:3955933Yersinia pestis KIM, complete genome87.6195 %Subject ←→ Query33.4603
NC_010159:1101241Yersinia pestis Angola, complete genome87.4571 %Subject ←→ Query33.9894
NC_010634:4045794Yersinia pseudotuberculosis PB1/+, complete genome99.7518 %Subject ←→ Query34.0011
NC_005810:3238391Yersinia pestis biovar Microtus str. 91001, complete genome87.4908 %Subject ←→ Query34.2139
NC_014562:1883517*Pantoea vagans C9-1 chromosome, complete genome77.7972 %Subject ←→ Query34.2182
NC_003143:645559Yersinia pestis CO92, complete genome87.5184 %Subject ←→ Query34.4007
NC_013421:2720500Pectobacterium wasabiae WPP163, complete genome78.318 %Subject ←→ Query34.6251
NC_014228:2883500Xenorhabdus nematophila ATCC 19061, complete genome75.3125 %Subject ←→ Query39.0811
NC_012779:3176820*Edwardsiella ictaluri 93-146, complete genome75.7966 %Subject ←→ Query39.7546
NC_014228:3282500Xenorhabdus nematophila ATCC 19061, complete genome75.5821 %Subject ←→ Query41.4806
NC_015566:4662171Serratia sp. AS12 chromosome, complete genome77.3805 %Subject ←→ Query41.8855
NC_013283:113660Cronobacter turicensis plasmid pCTU1, complete sequence77.4479 %Subject ←→ Query42.151
NC_005126:589000Photorhabdus luminescens subsp. laumondii TTO1, complete genome75.0214 %Subject ←→ Query42.3176