Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012967: Escherichia coli B str. REL606 chromosome, complete genome

NCBI: NC_012967

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Escherichia coli B str. REL606 is unable to use arabinose due to a mutation. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112161*3359921439Island text1.9116631.230.0014Neighbours41BLASTN+IslandViewer 12161.gbk
2145582*17010624525Island text1.79431.09521.0257Neighbours41BLASTN+IslandViewer 145582.gbk
353100055844727448Island text1.8840133.031620.9563Neighbours41BLASTN+IslandViewer 531000.gbk
470708373296025878Island text1.863934.020927.6326Neighbours41BLASTN+IslandViewer 707083.gbk
578653481237325840Island text2.295236.016923.0505Neighbours41BLASTN+IslandViewer 786534.gbk
61205985*123260426620Island text2.5805934.262117.2035Neighbours41BLASTNIslandViewer 1205985.gbk
71403733*142528021548Island text1.6370828.87538.358Neighbours41BLASTN+IslandViewer 1403733.gbk
81546000157261826619Island text1.987131.158121.9465Neighbours41BLASTN+IslandViewer 1546000.gbk
91593101161312420024Island text1.5785329.226233.6107Neighbours41BLASTN+IslandViewer 1593101.gbk
101967675*200459936925Island text1.5366928.993924.3045Neighbours41BLASTN+IslandViewer 1967675.gbk
112025127205772532599Island text4.0732342.482122.4959Neighbours41BLASTNIslandViewer 2025127.gbk
122105251212840923159Island text2.0975836.746628.9964Neighbours41BLASTN+IslandViewer 2105251.gbk
132409500243259923100Island text2.1439531.747419.0306Neighbours41BLASTN+IslandViewer 2409500.gbk
142669182269474625565Island text2.6795735.759826.1984Neighbours41BLASTN+IslandViewer 2669182.gbk
153012317304128628970Island text3.979439.626218.4646Neighbours41BLASTN+IslandViewer 3012317.gbk
163113768*313596322196Island text2.36932.87423.2451Neighbours41BLASTN+IslandViewer 3113768.gbk
173191319321527623958Island text1.8725130.465227.6631Neighbours41BLASTN+3191319.gbk
183549880359709947220Island text1.9642529.73627.8755Neighbours41BLASTN+3549880.gbk
193696877371784120965Island text1.5519331.186222.6946Neighbours41BLASTN+3696877.gbk
203729813*375344523633Island text2.4202435.113717.458Neighbours41BLASTNIslandViewer 3729813.gbk
213769499*379516525667Island text1.7643134.756720.185Neighbours41BLASTN+IslandViewer 3769499.gbk
224289929430895219024Island text1.471730.231620.5902Neighbours41BLASTN+4289929.gbk
234449576*447329023715Island text1.6460132.386914.5511Neighbours41BLASTN+IslandViewer 4449576.gbk
244473368*449648923122Island text1.5043529.979323.9128Neighbours41BLASTN+IslandViewer 4473368.gbk
254510393453527524883Island text1.7683131.073725.6234Neighbours41BLASTN+IslandViewer 4510393.gbk