Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011750: Escherichia coli IAI39 chromosome, complete genome

NCBI: NC_011750

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Escherichia coli IAI39 is a serotype O7:K1 strain from a urinary tract infection. Isolated from the urine of a patient with pyelonephritis in the 1980s in France. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112047*4221230166Island text2.5398734.361927.9773Neighbours41BLASTNIslandViewer 12047.gbk
2156799*17601919221Island text1.5716729.994524.1442Neighbours41BLASTN+IslandViewer 156799.gbk
3527470*55213724668Island text1.690130.395837.0325Neighbours41BLASTN+IslandViewer 527470.gbk
491995393907219120Island text1.5072538.604542.6727Neighbours51BLASTN+IslandViewer 919953.gbk
5955451*97876923319Island text1.5404529.261925.4964Neighbours41BLASTN+IslandViewer 955451.gbk
61034919106622831310Island text4.6005441.881920.8732Neighbours41BLASTNIslandViewer 1034919.gbk
71094000111509921100Island text1.8957528.55426.1786Neighbours41BLASTN+IslandViewer 1094000.gbk
81134721*116006625346Island text1.5666234.301624.0703Neighbours11BLASTN+1134721.gbk
91565000158659921600Island text1.8241332.591621.4642Neighbours41BLASTN+IslandViewer 1565000.gbk
101809943183281122869Island text1.8192129.909425.7096Neighbours41BLASTN+1809943.gbk
111849561187012520565Island text2.0627430.321821.5373Neighbours41BLASTN+IslandViewer 1849561.gbk
121931384195623124848Island text1.4352837.658133.4572Neighbours51BLASTN+IslandViewer 1931384.gbk
131978801200896030160Island text2.473633.179917.0597Neighbours41BLASTN+IslandViewer 1978801.gbk
142009889203291123023Island text1.480939.062528.755Neighbours51BLASTN+IslandViewer 2009889.gbk
152585015*261198826974Island text2.1880934.51317.7523Neighbours41BLASTN+IslandViewer 2585015.gbk
162928990*296940040411Island text2.3620434.228324.916Neighbours41BLASTN+IslandViewer 2928990.gbk
173407500*343726129762Island text4.1798239.746718.436Neighbours41BLASTN+IslandViewer 3407500.gbk
183545466*356309917634Island text1.5031932.563221.4886Neighbours41BLASTN+IslandViewer 3545466.gbk
193584000361674032741Island text3.8830341.418620.9015Neighbours41BLASTN+IslandViewer 3584000.gbk
203683760370613422375Island text1.9939528.821126.4344Neighbours41BLASTN+3683760.gbk
213768692*379303824347Island text1.6440829.787836.0093Neighbours41BLASTN+3768692.gbk
224307166*433102623861Island text2.4101333.340917.9437Neighbours41BLASTNIslandViewer 4307166.gbk
234390000444275952760Island text2.4138533.52124.9897Neighbours41BLASTN+IslandViewer 4390000.gbk
244490573451714226570Island text3.565439.85722.7531Neighbours41BLASTN+IslandViewer 4490573.gbk
254543135*456499721863Island text1.467136.05350.1096Neighbours51BLASTN4543135.gbk
264719477473972720251Island text1.5514634.289924.9202Neighbours41BLASTN+4719477.gbk
274775770480021124442Island text1.8772135.760423.0623Neighbours41BLASTN+IslandViewer 4775770.gbk
284947500*496714419645Island text1.8405432.936125.7571Neighbours41BLASTN+IslandViewer 4947500.gbk
294978000500028022281Island text2.0688831.706727.9746Neighbours41BLASTN+IslandViewer 4978000.gbk
305045927*506827722351Island text1.4429329.894223.59Neighbours41BLASTN+IslandViewer 5045927.gbk